Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060599.seq
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical ...    80   2e-15
Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical pr...    59   3e-09
Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical p...    29   2.3  

>AC024796-1|ABB88219.1|  210|Caenorhabditis elegans Hypothetical
           protein Y48G1C.12 protein.
          Length = 210

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/60 (53%), Positives = 44/60 (73%)
 Frame = +3

Query: 75  EVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYTDY 254
           ++ + AIW+LSSCK GFGID+L  D +E YWQSDG  PH + ++FQKKT V+ +  Y D+
Sbjct: 26  DISSQAIWALSSCKSGFGIDELLSDSVEKYWQSDGPQPHTILLEFQKKTDVAMMMFYLDF 85



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 32/76 (42%), Positives = 49/76 (64%)
 Frame = +2

Query: 260 DESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNH 439
           DESYTPS+I ++ G+   D+   +     EP GW  I ++D + +P R + +Q+ V+ NH
Sbjct: 88  DESYTPSKIQVKMGSSHQDIFFRQTQTFNEPQGWTFIDLRDKNGKPNRVFWLQVQVIQNH 147

Query: 440 QNGRDTHMRQIKVHSP 487
           QNGRDTH+R ++V  P
Sbjct: 148 QNGRDTHIRHVRVLGP 163


>Z73972-5|CAA98261.2|  201|Caenorhabditis elegans Hypothetical
           protein F15H10.3 protein.
          Length = 201

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 27/76 (35%), Positives = 38/76 (50%)
 Frame = +2

Query: 260 DESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIKDIHDRPIRTYMIQIAVLSNH 439
           DESY P  + I  G   ND        + +P GW  IPI D    P+R   +Q+ ++ NH
Sbjct: 86  DESYCPQEVRIDLGDGTNDWWLKMYRRVDQPKGWVKIPIHDAFGNPLRVMSLQMTIMKNH 145

Query: 440 QNGRDTHMRQIKVHSP 487
           + GRD  +R  +V  P
Sbjct: 146 EKGRDCVVRHFRVLGP 161



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = +3

Query: 51  YERSGTVREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVS 230
           ++    +R++   A  SLSS     G+D+L  +  E  W+++   PH     F KKT +S
Sbjct: 16  FKYPSNLRDITEEARISLSSVAHCGGVDELLHESSELAWRTNMSPPHRALFTFSKKTDIS 75

Query: 231 HIYIYTDYN 257
           ++ ++ DY+
Sbjct: 76  YVMLFLDYS 84


>Z81526-1|CAB04264.1|  816|Caenorhabditis elegans Hypothetical
           protein F33H2.2 protein.
          Length = 816

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 160 VSMQSSRN*SIPNPGLQEDKLQIA*LPTSRTVPDLSYTSGSFSKPA 23
           VS  S+   S PNP L         L TS+T  DLS +SG+ ++ A
Sbjct: 360 VSEDSALRASSPNPSLNNSVESFQSLSTSQTASDLSGSSGTVNRAA 405


>U29488-13|AAA68780.1| 1599|Caenorhabditis elegans Hypothetical
           protein C56C10.12 protein.
          Length = 1599

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 404 TYMIQIAVLSNHQNGRDTHMRQIKVHSPCEPTSFD*ISLEI-FQLFNSNN 550
           ++ +Q AVL   +    T+   +  HS CE TSF  I+L+I +Q+   NN
Sbjct: 315 SFELQQAVLDQMKKLLSTNRSNLMDHSVCEETSFRSIALQIQWQVIIINN 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,290,724
Number of Sequences: 27780
Number of extensions: 358726
Number of successful extensions: 830
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)