Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060599.seq
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    24   1.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 126 GIDQLRDDCMETYWQS-DGQLPHLVNIQFQKKTMVSHIYIYTD 251
           G  ++ ++ +E  W          +N++ +KK  +SH ++YT+
Sbjct: 425 GFSKIAENLLEKNWLPVHTSYKSGLNLEQEKKDSISHYHLYTN 467


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 111 CKPGFGIDQLRDDCME 158
           CKPG+  D  + +C E
Sbjct: 249 CKPGYQADVEKQECTE 264


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 32  RKRSTGVRKIRN 67
           RK+S+G RK+RN
Sbjct: 128 RKKSSGWRKLRN 139


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,571
Number of Sequences: 438
Number of extensions: 4079
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)