Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060599.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10 ...   100   8e-22
At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein sim...    29   2.2  
At1g19260.1 68414.m02396 hAT dimerisation domain-containing prot...    28   6.6  
At4g09660.1 68417.m01586 hypothetical protein                          27   8.7  

>At2g18290.1 68415.m02132 anaphase-promoting complex, subunit 10
           family / APC10 family contains Pfam PF03256:
           Anaphase-promoting complex, subunit 10 (APC10) domain;
           similar to anaphase promoting complex subunit APC10
           (GI:6463666) [Homo sapiens]
          Length = 192

 Score =  100 bits (240), Expect = 8e-22
 Identities = 45/79 (56%), Positives = 63/79 (79%), Gaps = 2/79 (2%)
 Frame = +2

Query: 257 LDESYTPSRISIRAGTHFNDLQEIEVIELIEPSGWEMIPIK--DIHDRPIRTYMIQIAVL 430
           LDESYTPS+ISIRAG  F++L+EI+ +EL++P+GW  + +   D  +  + T+M+QIA+L
Sbjct: 90  LDESYTPSKISIRAGDGFHNLKEIKSVELVKPTGWVCLSLSGTDPRETFVNTFMLQIAIL 149

Query: 431 SNHQNGRDTHMRQIKVHSP 487
           SNH NGRDTH+RQIKV+ P
Sbjct: 150 SNHLNGRDTHIRQIKVYGP 168



 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 37/62 (59%), Positives = 48/62 (77%)
 Frame = +3

Query: 69  VREVGNHAIWSLSSCKPGFGIDQLRDDCMETYWQSDGQLPHLVNIQFQKKTMVSHIYIYT 248
           +RE+G +A WS+SSCKPG G+  LRDD +ETYWQSDG  PHL+NIQFQKK  +  + +Y 
Sbjct: 27  LREMGKNAAWSVSSCKPGNGVTTLRDDNLETYWQSDGLQPHLINIQFQKKVKLQLVVLYV 86

Query: 249 DY 254
           D+
Sbjct: 87  DF 88


>At3g19620.1 68416.m02487 glycosyl hydrolase family 3 protein
           similar to beta-xylosidase A GB:BAA28267 from
           [Aspergillus oryzae]
          Length = 781

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -2

Query: 393 LS*MSLIGIISQPLGSINSITSISCRSLKCVPALIDILLGV*LSSNYSQCKCKYVIPLFF 214
           LS  S+I I + P+ ++N  TS+   ++ C    I I++GV    N+      +V+ +F+
Sbjct: 636 LSAPSIIHIKTNPIMNLNKTTSVDISTVNCHDLKIRIVIGV---KNHGLRSGSHVVLVFW 692

Query: 213 SETVC 199
               C
Sbjct: 693 KPPKC 697


>At1g19260.1 68414.m02396 hAT dimerisation domain-containing protein
          Length = 769

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 422 AVLSNHQNGRDTHMRQIKVHSPCEP 496
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHPNQRDEVRREYLIRGPCQP 53


>At4g09660.1 68417.m01586 hypothetical protein
          Length = 664

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 422 AVLSNHQNGRDTHMRQIKVHSPCEP 496
           ++LS H N RD   R+  +  PC+P
Sbjct: 29  SILSYHLNQRDEVRREYLIRGPCQP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,912,426
Number of Sequences: 28952
Number of extensions: 310553
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)