Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060598.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   135   5e-33
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   4.4  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.4  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    26   5.8  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   7.7  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   7.7  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   7.7  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  135 bits (327), Expect = 5e-33
 Identities = 57/85 (67%), Positives = 75/85 (88%)
 Frame = +3

Query: 255 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 434
           TGMV++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+
Sbjct: 49  TGMVMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGL 108

Query: 435 HXNRNDEEVGAGDQGLMFGYATDET 509
           H  +  EE+GAGDQG+MFGYATDET
Sbjct: 109 HYEKALEELGAGDQGIMFGYATDET 133



 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 36/44 (81%), Positives = 39/44 (88%)
 Frame = +1

Query: 124 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 255
           FLFTSESVGEGHPDK+CDQISDAILDA L  DP +KVACET +K
Sbjct: 5   FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASK 48



 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 24/41 (58%), Positives = 31/41 (75%)
 Frame = +2

Query: 512 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEY 634
           E +PLT++LAHKLN  ++  RR+G   W RPD+KTQVT EY
Sbjct: 135 EKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEY 175


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 174  RPNKRRYSRRAPESGSGRKSCM 239
            +P KR+Y+R+AP   S R++ +
Sbjct: 1211 QPTKRKYNRKAPTKSSTRQTTL 1232


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 28  WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 198
           W + K  M   S       T    S+D E  S+F   S+SV E      CD+ SD  L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 395 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 270
           EH+  C+   + G ++++   DR    + I  +S  C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 291 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 410
           + N DY K+  E VK  G D+       K C  ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 180 LVAHFVWMTLANRFRCEQKY*SIFHII 100
           L+ HFVW +      CE+K+ S  H++
Sbjct: 394 LLLHFVWKSALICVLCERKFQSWGHVV 420


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -2

Query: 426 QQCLVIVGLVRASHCMSCNQSLWTNHHNQYV*PFRAQLFD 307
           Q  +V V + +   CM+ +QSL  + HN ++  F+ +L D
Sbjct: 61  QYSIVFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLED 100


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 160 PDKMCDQISDAILDA-HLNQDPDAKVACETITK 255
           P K  ++  D ++ + H N DPDAK+A   ++K
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSK 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,911
Number of Sequences: 5004
Number of extensions: 70207
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)