Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060598.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 108 4e-24
01_02_0051 - 10655867-10657057 107 1e-23
01_03_0090 - 12347165-12348349 103 1e-22
12_02_0655 + 21588662-21589051 31 0.85
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 31 1.1
02_01_0375 + 2712289-2712957 29 3.4
>05_01_0264 + 2030080-2031270
Length = 396
Score = 108 bits (260), Expect = 4e-24
Identities = 50/87 (57%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 434
T MV++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GV
Sbjct: 51 TNMVMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGV 110
Query: 435 HXN--RNDEEVGAGDQGLMFGYATDET 509
H + + EE+GAGDQG MFGYATDET
Sbjct: 111 HGHFTKRPEEIGAGDQGHMFGYATDET 137
Score = 81.8 bits (193), Expect = 5e-16
Identities = 35/44 (79%), Positives = 40/44 (90%)
Frame = +1
Query: 124 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 255
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TK
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTK 50
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +2
Query: 512 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEY 634
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY
Sbjct: 139 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEY 179
>01_02_0051 - 10655867-10657057
Length = 396
Score = 107 bits (256), Expect = 1e-23
Identities = 49/87 (56%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 434
T MV++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GV
Sbjct: 51 TNMVMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGV 110
Query: 435 HXN--RNDEEVGAGDQGLMFGYATDET 509
H + + EE+GAGDQG MFGYATDET
Sbjct: 111 HGHFTKRPEEIGAGDQGHMFGYATDET 137
Score = 81.8 bits (193), Expect = 5e-16
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = +1
Query: 106 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 255
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TK
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTK 50
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/41 (58%), Positives = 29/41 (70%)
Frame = +2
Query: 512 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEY 634
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY
Sbjct: 139 ELMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEY 179
>01_03_0090 - 12347165-12348349
Length = 394
Score = 103 bits (248), Expect = 1e-22
Identities = 48/87 (55%), Positives = 64/87 (73%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 TGMVLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGV 434
T MV++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA GV
Sbjct: 50 TNMVMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGV 109
Query: 435 HXN--RNDEEVGAGDQGLMFGYATDET 509
H + + EE+GAGDQG MFGYATDET
Sbjct: 110 HGHFTKRPEEIGAGDQGHMFGYATDET 136
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/44 (81%), Positives = 40/44 (90%)
Frame = +1
Query: 124 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITK 255
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TK
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTK 49
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = +2
Query: 512 ECMPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 637
E MPL+ VLA KL ++ E+R+NG W RPD KTQVT EY+
Sbjct: 138 ELMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYL 179
>12_02_0655 + 21588662-21589051
Length = 129
Score = 31.1 bits (67), Expect = 0.85
Identities = 20/53 (37%), Positives = 24/53 (45%)
Frame = +3
Query: 72 WIRENQRTQL*YGRWISIFVHIGICWRGSSRQNVRPNKRRYSRRAPESGSGRK 230
WI QR ++ G W RGS V P +RR SRR P SG R+
Sbjct: 27 WIGGRQRPRMWIGDWREE--------RGSVAVGVAPGRRRESRRRPGSGEARR 71
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 540 ASTTVNGMHSSSHLLHNRTSSPGLLPQLPRHFCSXAPQ 427
+S+ +NG +L +SS G L QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>02_01_0375 + 2712289-2712957
Length = 222
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 530 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 637
VV +L++ + +++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,131,011
Number of Sequences: 37544
Number of extensions: 479160
Number of successful extensions: 1224
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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