Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060597.seq
         (681 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    26   0.25 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.1  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.3  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 135 TCALEAPLNNWTPCCPVIFCRRTAPCSRPGTTEP 236
           TC ++   N   PC P +       CS  GTT P
Sbjct: 150 TCDIDNDPNRAPPCDPAVCVLPDCFCSEDGTTIP 183


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 389 AAIGFWYCDTDQHT 348
           + I +W C+TD+ T
Sbjct: 27  SGIWYWQCNTDEET 40


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 443 FNYN*NFKRHQKMVGKW*AAIGFWYCDTDQHTKNTP 336
           ++ N  F R +K + K     G W  D+D   +  P
Sbjct: 14  YDLNNEFYRGRKKLSKHQQIYGIWADDSDNDEEERP 49


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 538 QIDGLNQHIKRFRYPDI 488
           Q+D L +  +R +YPDI
Sbjct: 231 QLDELEKAFERTQYPDI 247


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 538 QIDGLNQHIKRFRYPDILPTAKFSYEANVHSNSIIIEILN 419
           Q+D L     + RYPDI    + + + N+  + + +   N
Sbjct: 80  QLDVLEALFGKTRYPDIFMREEVALKINLPESRVQVWFKN 119


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,014
Number of Sequences: 336
Number of extensions: 3571
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)