Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060597.seq
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    44   2e-05
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    44   2e-05
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      28   1.4  
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   5.8  

>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +2

Query: 101 RCQKEAAWAITNLCLGGT--PEQLDAMLSCDILSPYCALLQARDHRAIIVVLDDSLIYCR 274
           + QKEA WAI+N   GG   P+Q+  ++    + P C LL  +D++ I V LD      R
Sbjct: 389 KIQKEACWAISNATSGGARRPDQIRYLVEQGAIKPLCNLLACQDNKIIQVALDGIENILR 448

Query: 275 YDENLRKFNSHTLLLPFLYI 334
             E  R  N   + L  +Y+
Sbjct: 449 VGELDRANNPDKINLYAVYV 468



 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHR 232
           +KEA W I+N+  G +  Q+  ++  +I+ P   LL   D +
Sbjct: 349 RKEACWTISNITAGNS-SQIQYVIEANIIPPLIHLLTTADFK 389


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
 Frame = +2

Query: 98  HRCQKEAAWAITNLCLGGT--PEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
           ++ +KEA WAI+N   GG   P+Q+  ++S  ++ P C +L   D++ I V LD
Sbjct: 388 YKTKKEACWAISNATSGGLGQPDQIRYLVSQGVIKPLCDMLNGSDNKIIQVALD 441



 Score = 33.9 bits (74), Expect = 0.022
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +2

Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHR 232
           +KEA W I+N+  G T +Q+ A++  +++ P   LL   D++
Sbjct: 349 RKEACWTISNITAGNT-QQIQAIIESNLIPPLVHLLSYADYK 389



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 98  HRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQA 220
           H  Q EAAWA+TN+   GT +Q   ++    +  +  LL +
Sbjct: 134 HLLQFEAAWALTNIA-SGTTDQTRIVVDSGAVPRFIQLLSS 173


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 380 GFWYCDTDQHTKNTPRCREMVVVVYDY*IFLN 285
           G +YC  D H + +PRC+     + D  + +N
Sbjct: 302 GKFYCHLDYHEQFSPRCKHCKTPIEDQAVHIN 333


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 597 KIKLQVKWWIIHLSNWHSLRHNCTL 671
           K++    WW+   S++H + H C L
Sbjct: 89  KLESTSTWWLSFTSHFHDVNHLCRL 113


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,223
Number of Sequences: 5004
Number of extensions: 55109
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)