Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060597.seq
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 43 3e-04
01_01_1062 + 8381281-8381490,8382353-8382449,8382546-8382637,838... 42 3e-04
07_03_1748 - 29195037-29195427,29195552-29195679,29195810-291959... 39 0.004
05_01_0405 - 3191639-3192059,3192107-3192234,3192312-3192440,319... 36 0.030
09_04_0266 + 16240162-16242075 31 0.84
07_03_0544 + 19309026-19310105 29 2.6
01_06_1328 + 36347963-36347984,36348609-36348764,36349083-363492... 29 4.5
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 28 7.9
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 28 7.9
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEA WAI+N GGT Q++ ++S + P C LL +D + ++ L+
Sbjct: 386 KKEAVWAISNATSGGTFNQIEYLVSQGCIKPLCDLLVHQDSKTVLTCLE 434
Score = 34.7 bits (76), Expect = 0.069
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
++EA W I+N+ GT EQ+ A++ +I++P LLQ
Sbjct: 344 KREACWTISNIT-AGTKEQIQAVIDSNIIAPLLHLLQ 379
>01_01_1062 +
8381281-8381490,8382353-8382449,8382546-8382637,
8382729-8382860,8382975-8383160,8383244-8383407,
8383514-8383592,8384484-8384612,8385102-8385229,
8385348-8385711
Length = 526
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEAAWAI+N GG+ +Q+ ++S + P C LL D R + V L+
Sbjct: 386 KKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLE 434
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 83 THN*LHRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARD 226
T N +KEA W I+N+ G +Q+ A+++ I+ P LLQ +
Sbjct: 336 TQNLKKSIKKEACWTISNI-TAGNKDQIQAVINAGIIGPLVNLLQTAE 382
>07_03_1748 -
29195037-29195427,29195552-29195679,29195810-29195938,
29196334-29196412,29196508-29196671,29196754-29196936,
29197021-29197146,29197237-29197328,29197412-29197508,
29198013-29198339
Length = 571
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
++EAAWAI+N GG+ +Q+ ++S L P C +L +D + L+
Sbjct: 422 KEEAAWAISNAASGGSNDQIQYLVSRGCLEPLCNVLTYQDADLVYACLE 470
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 110 KEAAWAITNLCLGGTPEQLDAMLSCDILS 196
+ A WA++NLC G P ++ DI+S
Sbjct: 256 RTATWALSNLCFGKLPAEVQVKPILDIIS 284
>05_01_0405 -
3191639-3192059,3192107-3192234,3192312-3192440,
3193538-3193616,3193716-3193879,3193968-3194153,
3194258-3194389,3194484-3194575,3195054-3195150,
3195258-3195485
Length = 551
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +2
Query: 83 THN*LHRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARD 226
T+N +KEA W I+N+ G EQ+ A+++ +I++P LLQ +
Sbjct: 342 TNNHKKSIKKEACWTISNITAGNR-EQIQAVINANIIAPLVHLLQTAE 388
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQL 166
+KEAAWAI+N GGT +Q+
Sbjct: 392 KKEAAWAISNATSGGTHDQI 411
>09_04_0266 + 16240162-16242075
Length = 637
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = -2
Query: 287 NFHHTCNR*VSHPALR*WLGGPW----PGAGRSTATEYHRTAWRPVVQGCLQGTGL 132
N H+ ++ P LR +G + G R AT Y RTAW ++ CL+ GL
Sbjct: 473 NVHYIAHKIKDSPELRGLIGDEYLKQLTGKFRLAATRYQRTAWLKIL-NCLRDEGL 527
>07_03_0544 + 19309026-19310105
Length = 359
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 235 GSVVPGLEQGAVRRQNITGQHGVQLFRGASKAQVCDGP 122
GS+VPGLE+ V+ + TG H + A+ Q D P
Sbjct: 250 GSIVPGLEELQVKAEATTGDHQQKSSAAAAGEQSWDLP 287
>01_06_1328 +
36347963-36347984,36348609-36348764,36349083-36349261,
36349347-36349442,36349525-36349594,36349635-36349705,
36350654-36351286
Length = 408
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 207 AQYGDRISQDSMASSCSGVPPRHR 136
++ G R+SQ+ MA+SC+ P R+R
Sbjct: 254 SKLGIRVSQEVMANSCTNTPRRNR 277
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/75 (24%), Positives = 35/75 (46%)
Frame = +3
Query: 210 CSRPGTTEPSS*CWMTHSSIAGMMKI*ENSIVIHYYYHFSTSGCILSVLVSIAIPKAYCS 389
C G + + ++T +IA + + + S V+ Y Y+ + G +S L + ++ Y
Sbjct: 636 CGEAGDIDHLAAAFLTSHNIAHGVNL-KKSPVLQYLYYLAQIGLAMSPLSNNSLFIDYHR 694
Query: 390 LPFSNHFLMTFKISI 434
PF FL +S+
Sbjct: 695 NPFPTFFLRGLNVSL 709
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 244 YDDGSVVPGLEQ-GAVRRQNITGQHGVQLFRGASKAQVCDGPGRFL 110
+ +G + G E G +RR G+ G + RGA+ + G GRFL
Sbjct: 107 FGEGEALAGAEDPGRIRRLRRPGRLGHEDARGAAGPNMRHGHGRFL 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,069,139
Number of Sequences: 37544
Number of extensions: 379362
Number of successful extensions: 876
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -