Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060597.seq
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57027| Best HMM Match : Arm (HMM E-Value=1.4e-12)                   50   1e-06
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)                   33   0.21 
SB_43637| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-07)                 29   4.6  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             28   8.0  

>SB_57027| Best HMM Match : Arm (HMM E-Value=1.4e-12)
          Length = 78

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +2

Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
           QKEAAWAI+N+ + G  EQ+  ++ C+ +   C LL  RD + + +VLD
Sbjct: 23  QKEAAWAISNMTVSGRREQVAVLVHCNAVEHLCKLLDVRDTQVVQIVLD 71


>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 32/49 (65%)
 Frame = +2

Query: 107  QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
            QKEAAWAI+N+ + G  EQ+  ++ C+ +   C LL  RD + + +VLD
Sbjct: 945  QKEAAWAISNMTVSGRREQVAVLVHCNAVEHLCKLLDVRDTQVVQIVLD 993



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 98  HRCQKEAAWAITNLCLGGTPEQLDAMLS 181
           H  Q EAAWA+TN+   GT EQ  A+++
Sbjct: 762 HSLQFEAAWALTNIA-SGTSEQTQAVVN 788


>SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)
          Length = 234

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 98  HRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQA-RDH 229
           H  Q EAAWA+TN+   GT EQ  A+++   +  +  LL + R H
Sbjct: 70  HSLQFEAAWALTNIA-SGTSEQTQAVVNAGAVPFFLKLLNSPRQH 113


>SB_43637| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-07)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +2

Query: 170 AMLSCDILSPYCALLQARDHRAIIVVLDDSLIYCRYDENLRKFNSHTLLLPFLYIWVYS* 349
           A+L    L+PY  ++    +       D SL+   Y  +L  F S++L+ PF+Y W    
Sbjct: 214 ALLMLSTLTPYFVIIVLMSYCGSC---DYSLLIKSYLVSLVMFQSNSLIHPFVYGW---- 266

Query: 350 CVGQYRNT 373
            + QYRN+
Sbjct: 267 RLRQYRNS 274


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 117 RP-GPSQTCALEAPLNNWTPCCPVIFCRRTAPCSRPG 224
           RP G  + CA +   +   PC P  +CR+ A    PG
Sbjct: 474 RPCGSGKFCAYDNATSETGPCSPGYYCRKGADTPTPG 510


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 192  CRRTAPCSRPGTTEPSS*CW 251
            CR    C  PG TEP   CW
Sbjct: 3120 CRGGYYCDEPGMTEPKGKCW 3139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,099,516
Number of Sequences: 59808
Number of extensions: 436642
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)