Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060597.seq
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 57 1e-08
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 57 1e-08
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 57 1e-08
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 45 4e-05
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 45 4e-05
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 45 4e-05
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical pr... 29 4.1
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical pr... 28 7.1
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
QKEAAWAI+N+ + G P Q++ M+ +L P+CA+L D + I VVLD
Sbjct: 378 QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLD 426
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALL 214
Q EAAWA+TN+ GT EQ A+++ + + LL
Sbjct: 125 QFEAAWALTNIA-SGTSEQTQAVVNAGAVPLFLQLL 159
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
QKEAAWAI+N+ + G P Q++ M+ +L P+CA+L D + I VVLD
Sbjct: 378 QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLD 426
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALL 214
Q EAAWA+TN+ GT EQ A+++ + + LL
Sbjct: 125 QFEAAWALTNIA-SGTSEQTQAVVNAGAVPLFLQLL 159
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
QKEAAWAI+N+ + G P Q++ M+ +L P+CA+L D + I VVLD
Sbjct: 287 QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVVLD 335
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALL 214
Q EAAWA+TN+ GT EQ A+++ + + LL
Sbjct: 34 QFEAAWALTNIA-SGTSEQTQAVVNAGAVPLFLQLL 68
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 98 HRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYC-ALLQ 217
H+CQ EA+WA++NL GGT Q+ AML +++ C ALLQ
Sbjct: 401 HKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ 441
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 101 RCQKEAAWAITNLCLGGTPEQLDAM 175
R Q EAAWA+TN+ G T + + A+
Sbjct: 147 RVQYEAAWALTNIVSGSTEQTIAAV 171
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 98 HRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYC-ALLQ 217
H+CQ EA+WA++NL GGT Q+ AML +++ C ALLQ
Sbjct: 401 HKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ 441
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 101 RCQKEAAWAITNLCLGGTPEQLDAM 175
R Q EAAWA+TN+ G T + + A+
Sbjct: 147 RVQYEAAWALTNIVSGSTEQTIAAV 171
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +2
Query: 98 HRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYC-ALLQ 217
H+CQ EA+WA++NL GGT Q+ AML +++ C ALLQ
Sbjct: 401 HKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ 441
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 101 RCQKEAAWAITNLCLGGTPEQLDAM 175
R Q EAAWA+TN+ G T + + A+
Sbjct: 147 RVQYEAAWALTNIVSGSTEQTIAAV 171
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical
protein F26H11.2c protein.
Length = 2266
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 345 LSVLVSIAIPKAYCSLPFSNHFLMTFKISIIIELECTFA 461
LS+ + I +YCSLP + FLM F + I++ +C F+
Sbjct: 6 LSIFSASKIKISYCSLPILDPFLMYFYL-IMLYSDCHFS 43
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical
protein F26H11.2b protein.
Length = 1693
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 345 LSVLVSIAIPKAYCSLPFSNHFLMTFKISIIIELECTFA 461
LS+ + I +YCSLP + FLM F + I++ +C F+
Sbjct: 6 LSIFSASKIKISYCSLPILDPFLMYFYL-IMLYSDCHFS 43
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical
protein F26H11.2a protein.
Length = 1691
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +3
Query: 345 LSVLVSIAIPKAYCSLPFSNHFLMTFKISIIIELECTFA 461
LS+ + I +YCSLP + FLM F + I++ +C F+
Sbjct: 6 LSIFSASKIKISYCSLPILDPFLMYFYL-IMLYSDCHFS 43
>Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical
protein F02H6.6 protein.
Length = 293
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Frame = +3
Query: 123 GPSQTCALEAP--LNNWTPCCPVIFCRRTAPCSRPGTTEPSS*CWMTHSSI 269
GP C + P +NNW C TAPC G W+ + ++
Sbjct: 86 GPGAPCCIGTPKIVNNWYHCASTSQTTPTAPCCPTGGVWSDWSSWVQNGNL 136
>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical
protein C34G6.1 protein.
Length = 1768
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 460 ANVHSNSIIIEILNVIKKWLENGKLQ*AFGIAILTNTLRIHPDVE 326
A H + I+IE+ NV KW K FG T +R +PD+E
Sbjct: 747 ATSHMDLILIELENV-SKWEHARKSSGIFGFIKDTMPIRQYPDIE 790
>Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical
protein F53B7.2 protein.
Length = 572
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 342 ILSVLVSIAIPKAYCSLPFSNHFLMTFKISIIIELECTF 458
+++V+V P+ CSL NHFL+ IS ++ L C F
Sbjct: 100 VINVIV-FCDPEMRCSLV--NHFLLVLSISDLVLLVCNF 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,642,468
Number of Sequences: 27780
Number of extensions: 329193
Number of successful extensions: 635
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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