Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060597.seq
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi... 46 2e-05
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i... 44 9e-05
At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMP... 44 1e-04
At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMP... 44 1e-04
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 42 3e-04
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 42 3e-04
At1g02690.2 68414.m00220 importin alpha-2 subunit, putative simi... 42 3e-04
At1g02690.1 68414.m00219 importin alpha-2 subunit, putative simi... 42 3e-04
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi... 41 7e-04
At5g52000.1 68418.m06453 importin alpha-1 subunit, putative simi... 38 0.006
At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2) sim... 37 0.014
At1g13780.1 68414.m01617 F-box family protein contains F-box dom... 30 1.6
At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein co... 27 8.7
>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 519
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVV---LDDSLIYCRY 277
+KEA WAI+N +GG+P Q+ ++ + + C +L D R I+V L+ LI
Sbjct: 384 KKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGLEMILIAGEV 443
Query: 278 DENLRKFNSHTLLL 319
D+NLR N ++ ++
Sbjct: 444 DKNLRDVNCYSQMI 457
>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
importin alpha-2 subunit (Karyopherin alpha-2 subunit)
(KAP alpha) SP:O04294 from [Arabidopsis thaliana]
Length = 531
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEAAW I+N GGT +Q+ M+S + P C LL D + + V L+
Sbjct: 389 KKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCLE 437
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARD 226
+KEA W I+N+ G +Q+ A++ I+ +LQ+ +
Sbjct: 347 KKEACWTISNI-TAGNADQIQAVIDAGIIQSLVWVLQSAE 385
>At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEAAWAI+N GG+ EQ+ +++ + P C LL D R + V L+
Sbjct: 393 KKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLE 441
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 83 THN*LHRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
T N +KEA W I+N+ G Q++A++ I+ P LLQ
Sbjct: 343 TQNHKKSIKKEACWTISNI-TAGNKLQIEAVVGAGIILPLVHLLQ 386
>At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEAAWAI+N GG+ EQ+ +++ + P C LL D R + V L+
Sbjct: 393 KKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDPRIVTVCLE 441
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 83 THN*LHRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
T N +KEA W I+N+ G Q++A++ I+ P LLQ
Sbjct: 343 TQNHKKSIKKEACWTISNI-TAGNKLQIEAVVGAGIILPLVHLLQ 386
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEAAWAI+N GG+ +Q+ ++ + P C LL D R I V L+
Sbjct: 386 KKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLE 434
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 83 THN*LHRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
T N +KEA W I+N+ G +Q+ ++ +++SP +LLQ
Sbjct: 336 TQNHKKSIKKEACWTISNI-TAGNKDQIQTVVEANLISPLVSLLQ 379
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEAAWAI+N GG+ +Q+ ++ + P C LL D R I V L+
Sbjct: 386 KKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDPRIITVCLE 434
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +2
Query: 83 THN*LHRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
T N +KEA W I+N+ G +Q+ ++ +++SP +LLQ
Sbjct: 336 TQNHKKSIKKEACWTISNI-TAGNKDQIQTVVEANLISPLVSLLQ 379
>At1g02690.2 68414.m00220 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 539
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEA WAI+N GG +Q+ ++S + P C LL D R + V L+
Sbjct: 391 KKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLE 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
+KEA W I+N+ G T Q+ + I+ P LL+
Sbjct: 349 KKEACWTISNITAGNT-SQIQEVFQAGIIRPLINLLE 384
>At1g02690.1 68414.m00219 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 538
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEA WAI+N GG +Q+ ++S + P C LL D R + V L+
Sbjct: 390 KKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDPRVVTVTLE 438
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
+KEA W I+N+ G T Q+ + I+ P LL+
Sbjct: 348 KKEACWTISNITAGNT-SQIQEVFQAGIIRPLINLLE 383
>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
to importin alpha subunit (Karyopherin alpha subunit)
(KAP alpha) SP:O22478 from [Lycopersicon esculentum]
Length = 528
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLD 253
+KEAAWAI N GG+ +Q+ ++ + + P C LL D + ++V L+
Sbjct: 374 KKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLE 422
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
+KEA W ++N+ G Q+ A+ DI LLQ
Sbjct: 332 RKEACWTVSNI-TAGCQSQIQAVFDADICPALVNLLQ 367
>At5g52000.1 68418.m06453 importin alpha-1 subunit, putative similar
to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 441
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQARDHRAIIVVLDDSL 262
+KEA WAI+N+ L G+ +Q+ M + C +L D R I+ D L
Sbjct: 314 KKEAVWAISNMALNGSHDQIKYMAEQSCIKQLCDILVYSDERTTILKCLDGL 365
>At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2)
similar to importin alpha 2 [Capsicum annuum]
GI:13752562; contains Pfam profiles PF01749: Importin
beta binding domain, PF00514:
Armadillo/beta-catenin-like repeat; non-consensus GG
donor splice site at exon 1 and 6; CT acceptor splice
site at exon 2
Length = 444
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = +2
Query: 107 QKEAAWAITNLCLGGTPEQLDAMLSCDILSP----YCALLQ 217
+KEAAWAI+N GG+P+Q+ M+ +++ +CAL+Q
Sbjct: 391 KKEAAWAISNATSGGSPDQIKYMVEQGVVNHCVIFWCALIQ 431
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +2
Query: 83 THN*LHRCQKEAAWAITNLCLGGTPEQLDAMLSCDILSPYCALLQ 217
THN +KEA W I+N+ G +Q+ A+ ++ P LLQ
Sbjct: 341 THNHKKSIKKEACWTISNI-TAGNRDQIQAVCEAGLICPLVNLLQ 384
>At1g13780.1 68414.m01617 F-box family protein contains F-box domain
Pfam:PF00646
Length = 451
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 274 PAIDE*VIQHYDDGSVVPGLEQGAVRRQNITGQHGVQLFRGASKAQVCDGPG 119
P ++E + H DD VV + +++R +I +H + LFR ++ D PG
Sbjct: 190 PVLEELIYLH-DDKLVVTRVRSRSLKRFSIPFRHKLSLFRRVTQTFEIDAPG 240
>At1g72470.1 68414.m08380 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 633
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = -2
Query: 296 IFLNFHHTCNR*VSHPALR*WLGGPW----PGAGRSTATEYHRTAWRPVVQGCLQGTGL 132
I N H+ + P LR +G + G R AT Y R AW V+ CL+ GL
Sbjct: 467 IMNNAHYIVQKIKGSPELREMIGDLYLRKLTGKFRQAATYYQRAAWVKVLY-CLRDEGL 524
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,636
Number of Sequences: 28952
Number of extensions: 288631
Number of successful extensions: 593
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -