Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060595.seq
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      27   1.9  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    27   1.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   3.3  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     26   5.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.7  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   5.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.7  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   9.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   9.9  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   9.9  

>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
 Frame = +3

Query: 249 NFVDNTNETGLLDIDTKCKPEISSSPQVSPNY-NHTGNPVMSQHTHRIRPTPPISKPIQG 425
           N   N N   + D+  K  P   +S  +  +Y +   NP +  H     P PP   P   
Sbjct: 101 NIPPNDNNYSISDLSIKSPPPSLTSDWIVDSYASDQDNPSVHTHNRTTPPIPPPHLPNAS 160

Query: 426 G 428
           G
Sbjct: 161 G 161


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = -3

Query: 646 WNIINLKTFDLLSGHRLDISSRTQINKHGALYYLLKNHRLI----LNLSPCCGITSGNVT 479
           W+I   K   +L GH +DI S   +  +  L+      +L     L  + CC    GN +
Sbjct: 132 WDIEQAKAISVLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAYCCATFPGNTS 191

Query: 478 D 476
           D
Sbjct: 192 D 192


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +3

Query: 312 ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNL----PTSLENAS 479
           ISS+P + P+   T   + S ++  +   PP++        +  K++L    P SL NA+
Sbjct: 290 ISSTPFMKPSIPSTIPTIPSAYSASVSSQPPLTHSYVHPGPQSHKYSLSSGPPASLYNAN 349

Query: 480 VTFPE 494
              PE
Sbjct: 350 ALTPE 354


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 275 CFICIVHKVSSCSNFV-IKSPSQLFKKSSISAMSWTLKTSAF 153
           C +C+ +K+ SC + V ++ P    K++   A+S  +KT  F
Sbjct: 109 CLLCVFYKLLSCDHIVNLQYP---LKRAVSKALSKQIKTHQF 147


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 269 ICIVHKVSSCSNFVIKSPSQLFKKSSISAMSWTLKTSAF 153
           IC   +V    N+++K    L   SS ++++W + T A+
Sbjct: 137 ICFDFRVRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAY 175


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 429  YIKEEKFNLPTSLENASVTFPEVIP 503
            YI    F +P +LEN S    E++P
Sbjct: 1124 YISNPIFQIPLTLENGSSAMVEILP 1148


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 281 QPCFICIVHKVSSCSNFVIKSPSQLFKKSSISAMSWTLKTS 159
           +P  IC+ H +  CS+F      QL K  S  A S  ++ S
Sbjct: 291 KPALICVGHLLQFCSSFEF-DHEQLEKLESFGASSLLIELS 330


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
 Frame = +3

Query: 234 IRTGTNFVDNTNE-TGLLDIDTKCKPEISSSPQVSPNYNH---TGNPVMSQHTHRIRPTP 401
           ++T +    +T +  G   +    K  +S     S N  H   TG+  +S H        
Sbjct: 295 MQTSSELTSSTEKMNGSHPLQLSNKSLLSIHLMQSKNQGHVSMTGSDKLSSHVQSETENA 354

Query: 402 PISKPIQGGYIKEEKFNL-PTSLENASVTFPEV 497
           P+SKP +   + E++  L  T L   S+T  E+
Sbjct: 355 PVSKPSKPNTLTEDEKPLQSTKLPGNSLTVGEL 387


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
 Frame = +3

Query: 372 QHTHRIRPTPPISKPIQGGYIKE---EKFNLPTSLENASVTFPE 494
           Q TH  RPTP  S P+     ++      N PT     + T PE
Sbjct: 589 QQTHSSRPTPNASSPLDVRSKQKPSSANSNAPTPAPTVNTTNPE 632


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +3

Query: 246 TNFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQG 425
           T   DN +E    D DTK +   +S  + S   N  G+      T + +P P  S     
Sbjct: 645 TLLADNVDEDIESDHDTKIEELANSDVEPSTEQNIGGDVSWGASTFQSKPQPSFS----F 700

Query: 426 GYIKEEKFNLP 458
           G   ++K N P
Sbjct: 701 GLTLDDKSNTP 711


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 315 SSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSLENAS 479
           S SP  SP   H    V  + T  I PT P+ +     + +EEK  L    E A+
Sbjct: 140 SKSPIPSPETIHKNIDVEEKET--IEPTTPVKEVETTAHAEEEKGPLTPDSEYAA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,211
Number of Sequences: 5004
Number of extensions: 62288
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)