Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060595.seq
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0529 + 3874865-3876285,3876352-3876367                           31   0.63 
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780...    30   1.5  
11_01_0180 - 1431758-1431838,1431975-1432061,1432180-1432230,143...    28   5.9  
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175...    28   5.9  
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060...    28   7.8  
11_06_0188 + 21036465-21036627,21036735-21036883,21037369-210374...    28   7.8  

>01_01_0529 + 3874865-3876285,3876352-3876367
          Length = 478

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +3

Query: 288 IDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSL 467
           I T+ + E  +  ++  +    G+   S+  HR +PTP     I GG+ + ++ +   SL
Sbjct: 3   IPTETETETGTGARIPSHRRRKGSSDGSRAVHRRKPTPTKETEIPGGHGRPKRSSSALSL 62

Query: 468 ENASVTFP 491
           + A  + P
Sbjct: 63  DGAGDSNP 70


>11_06_0263 +
           21777178-21777342,21777742-21777823,21777939-21778028,
           21778447-21778604,21778852-21778873,21779048-21779175,
           21779486-21779685,21780600-21780663,21781594-21781704,
           21781804-21781941,21782306-21782448,21782521-21782575,
           21782921-21782977,21783093-21783176
          Length = 498

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 293 INVQQPCFICIVHKVSSCSNFVIKSPSQLFKKSSISAMSWTLKTSAFIKGSIS 135
           +N Q P F C    ++SC   +I S  Q   K+ +  ++W+   +  + GS S
Sbjct: 144 LNTQTPLFTCKGGSLNSCILVLISSVGQSCHKNWVLCIAWSPDGNHLVSGSKS 196


>11_01_0180 -
           1431758-1431838,1431975-1432061,1432180-1432230,
           1432275-1432367,1432496-1432568,1432657-1432751,
           1433428-1433515,1433647-1433936
          Length = 285

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 390 RPTPPISKPIQGGYIKEEKFNLPTSLENASVTFPEVIPQQGLK 518
           R TPP  +P     +   +  LP+ L +   T   V P++G++
Sbjct: 14  RSTPPTPRPTAPPLLHSRRLTLPSRLASLPATIAVVHPRKGVR 56


>07_03_0982 +
           23116343-23117089,23117227-23117313,23117424-23117555,
           23118135-23118269,23118644-23118709,23118797-23118907,
           23119237-23119329,23119555-23119659,23119752-23119829
          Length = 517

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +3

Query: 306 PEISSSPQVSPNYNHTGNPVMSQHTHRIRPTP---PISKPIQGGY 431
           PE S +P    +Y  T   V +QH     P+P   P   P  GGY
Sbjct: 90  PESSPAPAPYYSYPPTAAGVATQHAPAAEPSPAPLPYDAPYYGGY 134


>11_06_0562 + 25003246-25003746,25004975-25005214,25005576-25006097,
            25006184-25007248,25007350-25007656,25007761-25008001,
            25008104-25008302,25008771-25008852,25008959-25009209,
            25010061-25010219,25010220-25010603
          Length = 1316

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 263  IVHKVSSCSNFVIKSPSQLFKK--SSISAMSWTLKTSAFIKGSISIFNNS*TIKP 105
            IVH +   SNF IKS SQL  K    I  +  T+K    + G   +  N  +++P
Sbjct: 1184 IVHDLQVVSNFKIKSHSQLPIKEDQEIKTVFDTVKDGKILVGHFHMSENFFSLRP 1238


>11_06_0188 +
           21036465-21036627,21036735-21036883,21037369-21037484,
           21037939-21038101
          Length = 196

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 178 DIAEIEDFLNNCDGDFMTKLEQE 246
           ++ E+  F++ C+GD +TKL  E
Sbjct: 52  EVVEVSTFMHACEGDAVTKLTNE 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,832
Number of Sequences: 37544
Number of extensions: 364693
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)