Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060595.seq
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)               31   0.84 
SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)                 31   1.1  
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)                   30   2.0  
SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)           29   2.6  
SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)                29   2.6  
SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)                      29   3.4  
SB_22755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 29   4.5  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 29   4.5  
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_4407| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 28   6.0  
SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058)                 28   6.0  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   6.0  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)                     28   7.9  
SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)                28   7.9  
SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1553

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +3

Query: 255 VDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYI 434
           VDN    G   +   CK  +  +  VS  ++  G P++S +     PT  +++  Q GYI
Sbjct: 342 VDNVPYRGPSIVYLLCKVPVQMASNVSFGFS-AGRPMVSSNIDSYYPT--LAQFYQQGYI 398

Query: 435 KEEKFNLPTSLENA 476
               +NLP +++ +
Sbjct: 399 MNTFYNLPMAVQQS 412


>SB_30029| Best HMM Match : Extensin_2 (HMM E-Value=0.45)
          Length = 622

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 315 SSSPQVSPNYNHTGNPVMSQHTHRI-RPTPPISKPIQGGYIKEEKFNLPTSLENASVTFP 491
           SS P  S  +  TG P   Q+  +  R  PP   P+QGG        L + + N S  FP
Sbjct: 452 SSVPDSSMPFLATGMPPDRQNQPQYSRGFPPFQSPLQGG-SSSPNVTLGSPMRNLSEGFP 510

Query: 492 EVIPQQG 512
              P QG
Sbjct: 511 GGNPLQG 517


>SB_35625| Best HMM Match : DUF296 (HMM E-Value=0.0053)
          Length = 885

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 276 GLLDIDTKCKPEISSSPQVSPNYNHTGNPVM 368
           GL    TK KPE+   P+V+P++  T  P++
Sbjct: 106 GLGSTPTKSKPEVEIEPEVAPSFAETNLPLL 136


>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/77 (23%), Positives = 30/77 (38%)
 Frame = +3

Query: 261 NTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKE 440
           NT   GLL +D +C  E     ++  N      P   QH   + P+   ++       + 
Sbjct: 109 NTERFGLLLVDVRCAKEERCLQKICSNVRDQEQPTGLQHESSMNPSLMCTQAFSDYSHQS 168

Query: 441 EKFNLPTSLENASVTFP 491
                 TS+++ S T P
Sbjct: 169 NMMTSNTSIKDTSATQP 185


>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1607

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 541 KNHRLILNLSPCCGITSGNVTDAFSRDVGKLNFSSLIYPP 422
           KN +L+   + C  I + N+ D FS +V    F++ I PP
Sbjct: 627 KNAKLVNGQTYCTKIKATNMADVFSHEVSSDGFTADITPP 666


>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
          Length = 1699

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 541 KNHRLILNLSPCCGITSGNVTDAFSRDVGKLNFSSLIYPP 422
           KN +L+   + C  I + N+ D FS +V    F++ I PP
Sbjct: 573 KNAKLVNGQTYCTKIKATNMADVFSHEVSSDGFTADITPP 612


>SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)
          Length = 823

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 297 KCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLP 458
           +C+P   SS    PN N     + +  T +   TP I+ P  GG +K    N P
Sbjct: 638 QCRPRDDSSHSEIPNINRPSASINTPITPQTDGTPTINPP--GGDLKAPSINRP 689


>SB_43834| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
          Length = 1227

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 261 NTNETGLLDIDTKCKPEI--SSSPQVSPNYNHTGNPVMSQHTHRI 389
           + N  G    DT+CK E+  + SP V P   H+G   + + T+++
Sbjct: 868 HVNTAGTASADTRCKHELAFADSPVVCPQ-THSGESAIPEQTNQV 911


>SB_25705| Best HMM Match : PH (HMM E-Value=2e-17)
          Length = 409

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 225 YDKIRTGTNFV-DNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPT- 398
           YD +  GT    D   +  + D +   KP     PQV+ +      PV S+    I+P  
Sbjct: 204 YDDVAAGTKLQEDKLEDYEVPDTNMSTKP-----PQVALSDECYEAPVESEEAPPIQPPR 258

Query: 399 PPISKPIQG 425
           PP S+PIQG
Sbjct: 259 PPKSEPIQG 267


>SB_22755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +3

Query: 237 RTGTNFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTP 401
           RTG  F     +T L D     KP+ SS P  S N   T +    +H+ RIR  P
Sbjct: 52  RTGETFSFQPTDTALGDDVCDPKPDTSSIPDTSAN---TVDKPPLRHSTRIRKAP 103


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225 YDKIRTGTNFVDNTNETGLLDIDTK-CKPEISSSP----QVSPNYNHTGNPVMSQHTHRI 389
           +D  +      D+T++   L  D K C  + S       Q+S N NHT N  MSQ TH+ 
Sbjct: 602 FDDTQCNGQTSDDTHKRNELSFDDKQCNGQRSDDTLYNGQLSDN-NHTCNRQMSQDTHKC 660

Query: 390 RPTPPISKPIQG 425
              P +     G
Sbjct: 661 NGQPHVGIKCDG 672


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225 YDKIRTGTNFVDNTNETGLLDIDTK-CKPEISSSP----QVSPNYNHTGNPVMSQHTHRI 389
           +D  +      D+T++   L  D K C  + S       Q+S N NHT N  MSQ TH+ 
Sbjct: 584 FDDTQCNGQTSDDTHKRNELSFDDKQCNGQRSDDTLYNGQLSDN-NHTCNRQMSQDTHKC 642

Query: 390 RPTPPISKPIQG 425
              P +     G
Sbjct: 643 NGQPHVGIKCDG 654


>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 942

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/71 (25%), Positives = 32/71 (45%)
 Frame = +3

Query: 294 TKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSLEN 473
           T+ + +I ++P +    +   N ++  HT    P P +SK       +E + N PT+   
Sbjct: 565 TEFEEKICATPAIESFKDELQNAIVPSHTEE--PGPAVSKEQVASNTEESEQNKPTTQSG 622

Query: 474 ASVTFPEVIPQ 506
            SV    V P+
Sbjct: 623 LSVDKSGVEPK 633


>SB_4407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +3

Query: 237 RTGTNFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTP 401
           RTG  F     +T L D     KP+ SS P  S N   T +    +H+ RIR  P
Sbjct: 19  RTGETFSFQPTDTALGDDVCDPKPDTSSIPDTSAN---TVDKPPLRHSTRIRKAP 70


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 652  ALWNIINLKTFDLLSGHRLDISSRTQINKHGALYYL--LKNHRLILNLSPCCGITS 491
            A+  I  LKT  +L G   +    TQ  ++  +++   +KNHR++L   P  G  S
Sbjct: 943  AIMKIPTLKTVIVLLGCETNFGPLTQCFQYFEIFFTFSVKNHRILLRNRPKAGTAS 998


>SB_40358| Best HMM Match : Pox_A32 (HMM E-Value=0.058)
          Length = 874

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 VDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGN 359
           VD   +TG    D +C+ EI+++  V P+    GN
Sbjct: 624 VDCRADTGTASADARCQREIAAADSVEPSIPEWGN 658


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 306 PEISSSPQVSPNYNHTGNPVMSQHT-HRIRPTPP 404
           P   + PQ +P+Y H+G+ +   H  +  + TPP
Sbjct: 171 PHADNGPQATPSYGHSGSVLTLSHADNGPKATPP 204


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 306 PEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKP 416
           P  SSSP V P+ N   NP  + +++  R   P S P
Sbjct: 585 PSSSSSPSVRPSPNLISNPNRNSNSNSNRNPNPSSNP 621


>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
          Length = 2245

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 169 NVHDIAEIEDFLNNCDGDFMTKLEQELTLWTIQMKQ 276
           N  +I +++D   N D DF+ KLE     W+   K+
Sbjct: 811 NCQEIIDVQDEKTNIDVDFVRKLENIQAKWSCTDKE 846


>SB_1015| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 828

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = +3

Query: 294 TKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPI-------SKPIQGGYIKEEKFN 452
           T  K E    P+  P +      + SQH     PTP +        + ++    +EEK  
Sbjct: 560 TPAKTEQLKKPRAKPTFERREADIKSQHKPSQLPTPWVEPEPEAEKQEVKEEQKEEEKPP 619

Query: 453 LPTSLENASVTFPEVIPQQG 512
            P SLE   +  PE +   G
Sbjct: 620 TPASLEPERLPDPEFVRAPG 639


>SB_10779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 214 DGDFMTKLEQELTLWTIQMKQGCWTLIRNASLKFHHLHK 330
           DGD + K  +E       + Q CW+L+ +   +F +LH+
Sbjct: 849 DGDILPK-PKECPREMYSLMQDCWSLVPHERPRFRYLHQ 886


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,230,749
Number of Sequences: 59808
Number of extensions: 443707
Number of successful extensions: 1405
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)