Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060595.seq
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical pr...    32   0.43 
Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical pr...    32   0.43 
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr...    32   0.43 
AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical ...    32   0.43 
AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical ...    32   0.43 
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical p...    29   3.0  
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    29   4.0  
AC006684-12|AAN60497.1|  528|Caenorhabditis elegans Hypothetical...    29   4.0  
AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical...    29   4.0  

>Z83227-6|CAB54250.1| 1427|Caenorhabditis elegans Hypothetical
           protein F14F4.3b protein.
          Length = 1427

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 592 ISSRTQINKHGALYYLLKNHRLILNLSPCCGITSGNVTDAFSRDVGKLNFSSLIYPP 422
           +S RT I   GA+  LL  ++ +LN    CG T  +V + F+ D G+  F ++ + P
Sbjct: 215 VSYRTGIRVRGAVLALL--YKNVLNSKDLCGKTESDVINIFAND-GQRLFDAVTFAP 268


>Z83227-5|CAB54251.1| 1400|Caenorhabditis elegans Hypothetical
           protein F14F4.3a protein.
          Length = 1400

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 592 ISSRTQINKHGALYYLLKNHRLILNLSPCCGITSGNVTDAFSRDVGKLNFSSLIYPP 422
           +S RT I   GA+  LL  ++ +LN    CG T  +V + F+ D G+  F ++ + P
Sbjct: 215 VSYRTGIRVRGAVLALL--YKNVLNSKDLCGKTESDVINIFAND-GQRLFDAVTFAP 268


>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
           protein F56C9.10b protein.
          Length = 1031

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +3

Query: 279 LLDIDTKCKPEISSSPQV--SPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFN 452
           LLD  +  K  +SS P V  SP  +    PV+++ T     +PP    ++   ++ E+  
Sbjct: 86  LLDFSSSDKSSLSSRPNVKDSPEEDEDAVPVVNRTTTSPPTSPPSQTAVEQDSLQAEEML 145

Query: 453 LPTSLENASVTFP 491
           +  SL++A    P
Sbjct: 146 VDMSLDDAPAAPP 158


>AL021446-3|CAB54225.1| 1427|Caenorhabditis elegans Hypothetical
           protein F14F4.3b protein.
          Length = 1427

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 592 ISSRTQINKHGALYYLLKNHRLILNLSPCCGITSGNVTDAFSRDVGKLNFSSLIYPP 422
           +S RT I   GA+  LL  ++ +LN    CG T  +V + F+ D G+  F ++ + P
Sbjct: 215 VSYRTGIRVRGAVLALL--YKNVLNSKDLCGKTESDVINIFAND-GQRLFDAVTFAP 268


>AL021446-2|CAB54226.1| 1400|Caenorhabditis elegans Hypothetical
           protein F14F4.3a protein.
          Length = 1400

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 592 ISSRTQINKHGALYYLLKNHRLILNLSPCCGITSGNVTDAFSRDVGKLNFSSLIYPP 422
           +S RT I   GA+  LL  ++ +LN    CG T  +V + F+ D G+  F ++ + P
Sbjct: 215 VSYRTGIRVRGAVLALL--YKNVLNSKDLCGKTESDVINIFAND-GQRLFDAVTFAP 268


>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
           protein F56C9.10a protein.
          Length = 1028

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 279 LLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLP 458
           LLD  +  K  +SS P  SP  +    PV+++ T     +PP    ++   ++ E+  + 
Sbjct: 86  LLDFSSSDKSSLSSRPD-SPEEDEDAVPVVNRTTTSPPTSPPSQTAVEQDSLQAEEMLVD 144

Query: 459 TSLENASVTFP 491
            SL++A    P
Sbjct: 145 MSLDDAPAAPP 155


>Z79695-4|CAB01969.3|  374|Caenorhabditis elegans Hypothetical
           protein F27D4.4a protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +3

Query: 60  VNKNNFQKHLIKFLLWFYGLRIVKNGY*SFYEC--GRFQCP-RHC 185
           VNK N  KH+I  +  ++   +  N Y  F+EC  G  +C  RHC
Sbjct: 153 VNKKNKNKHMIDIVCKYFLEAVENNKYGWFWECPNGGEKCQYRHC 197


>Z46787-14|CAA86751.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 542 EKSSADFELESLLWYNFRKR-HGRILKGCWQIEFLFFNISTLYWFTDRGRWPNSMRVL*H 366
           E+       E + WY    R  G+ L G   + +L FN + + W TD  +WP  +R   H
Sbjct: 654 EEKLKSLRKEFMYWYPIDMRASGKDLIGN-HLTYLLFNHAAI-WPTDTSKWPKGIRANGH 711


>Z36238-11|CAA85280.1| 1186|Caenorhabditis elegans Hypothetical
           protein R74.1 protein.
          Length = 1186

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 542 EKSSADFELESLLWYNFRKR-HGRILKGCWQIEFLFFNISTLYWFTDRGRWPNSMRVL*H 366
           E+       E + WY    R  G+ L G   + +L FN + + W TD  +WP  +R   H
Sbjct: 654 EEKLKSLRKEFMYWYPIDMRASGKDLIGN-HLTYLLFNHAAI-WPTDTSKWPKGIRANGH 711


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 222 FYDKIRTGTN-FVDNTNETGLLDIDTKCKPEISSSPQVSPNYNHTGNPVMSQHTHRIRPT 398
           F+DK +T T   V    +  ++++D   K +  + P+  PN ++       +H  RI   
Sbjct: 253 FFDKAKTATETLVKEIKDEVIVEVD---KDKTETKPE--PNVSNELTAEEFEHIRRINEM 307

Query: 399 PPISKPIQGGYIKEEK 446
             I +PIQ   I +E+
Sbjct: 308 AGIDEPIQPPPIAQER 323


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 282  LDIDTKCKPEISSSPQVSPNYNHT---GNP-VMSQHTHRIRPTPP 404
            L I ++ K   SSS  ++PNY+ T   GNP  M    + I+P PP
Sbjct: 1577 LTIGSEKKNNQSSSSALNPNYDFTRTPGNPNRMQMSQNSIQPAPP 1621


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 321 SPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKF-NLPTSLENASVTFPE 494
           SPQ+S   N+    +M+  T  + P PP   PI G         NL    +N   T PE
Sbjct: 520 SPQMSQQRNYPQLQMMASQTPSMAPLPPPMPPIVGSSSAISSIQNLLEKQQNQYETAPE 578


>AC006684-12|AAN60497.1|  528|Caenorhabditis elegans Hypothetical
           protein T02H6.1b protein.
          Length = 528

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 661 VLFALWNIINLKTFDLLSGHRLDISSRTQINKHGALY 551
           +LF +WN  +L+    LSGHR  I S T   K   LY
Sbjct: 228 ILFQIWNFDSLEHIKDLSGHRGPIFSLTFQLKTNNLY 264


>AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical
           protein T02H6.1a protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 661 VLFALWNIINLKTFDLLSGHRLDISSRTQINKHGALY 551
           +LF +WN  +L+    LSGHR  I S T   K   LY
Sbjct: 228 ILFQIWNFDSLEHIKDLSGHRGPIFSLTFQLKTNNLY 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,091,798
Number of Sequences: 27780
Number of extensions: 349438
Number of successful extensions: 925
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)