Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060595.seq
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.1  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   8.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 178 DIAEIEDFLNNCDGDFMTKLEQELTLWTI 264
           DI  +  +LN   GDF T  E ++T + I
Sbjct: 202 DIINVPAYLNTYKGDFPT--ETDITFYII 228


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 139 IDPFMNADVFNVHDIAEIEDFLNNCDGDFMT 231
           + PF    +  V      E FL  C  DF+T
Sbjct: 182 VTPFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 139 IDPFMNADVFNVHDIAEIEDFLNNCDGDFMT 231
           + PF    +  V      E FL  C  DF+T
Sbjct: 182 VTPFTVLPLLKVWGRYTTEGFLTTCSFDFLT 212


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 279 LLDIDTKCKPEISSSPQVSPNYNH 350
           L D     KP+I   P +SP+  H
Sbjct: 731 LTDTVLAYKPKILGKPTISPDSRH 754


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 12  WSMENHQINVKIMPKFVNKNNFQ 80
           W  + +Q+N   +  F N N FQ
Sbjct: 151 WPFKEYQMNGNNITNFKNSNIFQ 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,410
Number of Sequences: 438
Number of extensions: 4729
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)