Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060595.seq
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47430.1 68418.m05844 expressed protein                             36   0.019
At4g32500.1 68417.m04626 potassium channel protein, putative sim...    32   0.40 
At5g19520.1 68418.m02325 mechanosensitive ion channel domain-con...    31   0.70 
At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein ...    29   2.1  
At5g27260.1 68418.m03252 hypothetical protein                          28   6.5  
At3g10770.2 68416.m01297 expressed protein                             28   6.5  
At3g10770.1 68416.m01296 expressed protein                             28   6.5  
At5g47650.1 68418.m05883 MutT/nudix family protein similar to Nu...    27   8.6  
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family...    27   8.6  
At2g25130.1 68415.m03006 armadillo/beta-catenin repeat family pr...    27   8.6  
At2g04430.1 68415.m00447 MutT/nudix family protein similar to SP...    27   8.6  

>At5g47430.1 68418.m05844 expressed protein 
          Length = 879

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +3

Query: 345 NHTGNPVMSQHTHRIRPTPPISKPIQGGYIKEEKFNLPTSLENASVTFPEVIPQQGLKFK 524
           +H G    SQH HR R  PP S+P       E + NL +S+  A ++FPE     G + K
Sbjct: 736 HHRGETERSQHHHRKRSEPPSSEPPVPATKAEIENNLKSSV-FARISFPEEETSSGKRRK 794

Query: 525 I 527
           +
Sbjct: 795 V 795


>At4g32500.1 68417.m04626 potassium channel protein, putative
           similar to potassium channel [Solanum tuberosum]
           gi|1514649|emb|CAA60016; similar to AKT1 [Arabidopsis
           thaliana] gi|563112|gb|AAA96810; member of the 1 pore, 6
           transmembrane (1P/6TM- Shaker-type) K+ channel family,
           PMID:11500563
          Length = 880

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 312 ISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKPI 419
           +S +P++ P   H+  PVM+ H H     PP+++ +
Sbjct: 737 VSGTPEIKPLMKHSSEPVMTHH-HSREAMPPLARAV 771


>At5g19520.1 68418.m02325 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 742

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 309 EISSSPQVSPNYNHTGNPVMSQHTHRIRPTPPISKP 416
           E S  P+ SP++N   +P       + +P PPIS P
Sbjct: 20  EDSKDPRASPSFNPLASPDSDAGIEKSKPVPPISIP 55


>At4g15720.1 68417.m02393 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 616

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
 Frame = +3

Query: 291 DTKCKPEISSSPQVSPNYNHTGNP----VMSQHTHRIRPTPP 404
           D  C+P + S   V   YN  G P     M Q  H  RP PP
Sbjct: 88  DEMCEPNVVSWTSVISGYNDMGKPQNALSMFQKMHEDRPVPP 129


>At3g03920.1 68416.m00407 Gar1 RNA-binding region family protein
           contains Pfam profile PF04410: Gar1 protein RNA binding
           region
          Length = 202

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 178 DIAEIEDFLNNCDGDFMTKLEQE 246
           ++ E+  F++ C+GD +TKL QE
Sbjct: 57  EVVEVATFVHACEGDAVTKLSQE 79


>At5g27260.1 68418.m03252 hypothetical protein
          Length = 303

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 249 NFVDNTNETGLLDIDTKCKPEISSSPQVSPNYNH 350
           N+ D+      L ++TK  PEI+     S NYNH
Sbjct: 36  NWRDSNGTISKLTVETKFMPEINKEFCRSKNYNH 69


>At3g10770.2 68416.m01297 expressed protein
          Length = 325

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 306 PEISSSPQVSPNYNHTGNPVMSQHTHRIRP-TPPISKPI 419
           P +    Q + NY H  NP +S  TH +   TP  + P+
Sbjct: 264 PHMPRGHQANLNYGHPLNPALSPFTHNVASYTPWPNSPV 302


>At3g10770.1 68416.m01296 expressed protein
          Length = 333

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 306 PEISSSPQVSPNYNHTGNPVMSQHTHRIRP-TPPISKPI 419
           P +    Q + NY H  NP +S  TH +   TP  + P+
Sbjct: 272 PHMPRGHQANLNYGHPLNPALSPFTHNVASYTPWPNSPV 310


>At5g47650.1 68418.m05883 MutT/nudix family protein similar to
           Nucleoside diphosphate-linked moiety X motif 6 (Protein
           GFG) from {Xenopus laevis} SP|P13420, {Homo sapiens}
           SP|P53370; contains Pfam profile PF00293: NUDIX domain
          Length = 278

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 223 FMTKLEQELTLWTIQMKQGCW 285
           F T L   L+ WT+Q K+G W
Sbjct: 43  FSTLLRSSLSTWTLQGKKGVW 63


>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
           protein 
          Length = 477

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +3

Query: 306 PEISSSPQVSPN-----YNHTGNPVMSQHTHRIRPTPPISKPIQG 425
           P  SS+P  SP      Y H  +P    H H + P P +S P +G
Sbjct: 316 PATSSTPSPSPQPETHQYPHH-HPHHHHHHHELAPEPSLSPPTKG 359


>At2g25130.1 68415.m03006 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 468

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 322 DDEISGLHFVSMSNSPVSFVLSTKLVPVLI 233
           +D +  L+ +S+ +  VSF+L T L+P L+
Sbjct: 261 EDALRALYNLSIYHQNVSFILETDLIPFLL 290


>At2g04430.1 68415.m00447 MutT/nudix family protein similar to
           SP|P53370 Nucleoside diphosphate-linked moiety X motif 6
           {Homo sapiens}; contains Pfam profile PF00293: NUDIX
           domain
          Length = 283

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 217 GDFMTKLEQELTLWTIQMKQGCW 285
           GDF +KL+  L  W  Q K+G W
Sbjct: 34  GDFDSKLDVSLKAWKDQGKKGIW 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,009,336
Number of Sequences: 28952
Number of extensions: 317007
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)