Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060594.seq
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 21  HLRSGRGCPDCWCPPGASQLPPLQRV 98
           HLR GRG    + P  ++ +P  + V
Sbjct: 192 HLRKGRGAIGAYGPEKSASIPKKKEV 217


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 151 NRQPDQRILQPNQHPSG*TLCKGGSWLAP 65
           N  PD   ++P    S  TLC G   ++P
Sbjct: 285 NGSPDVIKVEPELSDSEKTLCNGSKGISP 313


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 423 APKPYARWTRYRRRPSLCASSDSDNEHRGS 334
           AP+  +R T+     S  +S+D D+E R S
Sbjct: 122 APRTASRETKSSESDSGASSADPDDELRSS 151


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 387  RRPSLCASSDSDNEHRGS 334
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 387  RRPSLCASSDSDNEHRGS 334
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 387  RRPSLCASSDSDNEHRGS 334
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 387  RRPSLCASSDSDNEHRGS 334
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 662 SPKLKHMCNKLIKYWGVIAR*HSCFNK 582
           SPK++H   KL + + ++      +NK
Sbjct: 605 SPKMRHELQKLAQVYRILGETIETWNK 631


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,153
Number of Sequences: 336
Number of extensions: 4187
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)