Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060594.seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po...   128   1e-30
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...   112   5e-26
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces...    55   1e-08
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.20 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.36 
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    29   0.47 
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    29   0.63 
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...    29   0.63 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.4  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   3.3  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    26   4.4  
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc...    26   4.4  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    26   5.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   7.7  
SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.7  

>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score =  128 bits (308), Expect = 1e-30
 Identities = 67/86 (77%), Positives = 74/86 (86%)
 Frame = +1

Query: 10  GIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 189
           GIIAIYGLVV+VLI+G L++  +  LY GFI LGAGL+VG +GLAAGFAIGIVGDAGVRG
Sbjct: 62  GIIAIYGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIVGDAGVRG 119

Query: 190 TAQQPRLFVGMILILIFAEVLGFTDL 267
           TAQQPRLFV MILILIFAEVLG   L
Sbjct: 120 TAQQPRLFVAMILILIFAEVLGLYGL 145


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score =  112 bits (269), Expect = 5e-26
 Identities = 53/86 (61%), Positives = 67/86 (77%)
 Frame = +1

Query: 10  GIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 189
           GII +YGLV++VLIAG +    +Y L+ GFIHL AGLAVG +G+AAG+AIG+VGD GV+ 
Sbjct: 62  GIIGVYGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQS 121

Query: 190 TAQQPRLFVGMILILIFAEVLGFTDL 267
             +Q R+FV M+LILIFAEVLG   L
Sbjct: 122 FMRQDRIFVSMVLILIFAEVLGLYGL 147


>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 199

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
 Frame = +1

Query: 13  IIAIYGLVVAVLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGFAIGIVGD 174
           ++AIY L++A++ +  + +  PA +      Y GF     G+ VG   L  G  +GI G 
Sbjct: 95  VVAIYSLIIAIVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGS 154

Query: 175 AGVRGTAQQPRLFVGMILILIFAEVLGFTDL 267
           +     AQ   LFV ++++ IF  VLG   L
Sbjct: 155 SAALADAQDASLFVKVLVVEIFGSVLGLFGL 185



 Score = 29.9 bits (64), Expect = 0.36
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 106 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGFTDL 267
           LG    V F  + A + I I G + + G  + PR+    ++ +IF EV+    L
Sbjct: 48  LGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSL 101


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 194  AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNP 93
            +VP  P++P MP   P+A P    A  AP   NP
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 263 SVKPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAK 117
           S KP++S+K+  + +     G  A+P+ P  P  P  +P  R    T K
Sbjct: 402 SYKPSSSSKVSAKSVSRKPTGAPAIPKLP--PKHPSRQPTVRATPSTGK 448


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 529 CIFLLKTFCKNDQTSIMVLLKHECYRAMTPQYLINLLHIC 648
           C+  L++F K D+  + +  KHE +R    +++++  H C
Sbjct: 321 CVICLESFTKGDKV-VALPCKHEFHRPCIAKWIVDYRHAC 359


>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 565 DRFYKKFLVKIYRFTSLDASSRSNKA 488
           +  Y K LVK+YRF +    SR NKA
Sbjct: 21  ENVYLKLLVKLYRFLARRTDSRFNKA 46


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 565 DRFYKKFLVKIYRFTSLDASSRSNKA 488
           +  Y K LVK+YRF +    SR NKA
Sbjct: 21  ENVYLKLLVKLYRFLARRTDSRFNKA 46


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 194 AVPRTPAS--PTMPMAKPAARPENPTAKPAP 108
           A P  P S  P++PM  PAA P  P+A  AP
Sbjct: 427 APPSLPPSAPPSLPMGAPAAPPLPPSAPIAP 457


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +1

Query: 118 LAVGFSGLAAGFAIGIVGD-AGVRGTAQQPRLFVGMIL-ILIFAEVLGFTDLSSP 276
           +A+G +GLA G  IG+ G  A     A    LF G+ L  +I A  LG    S+P
Sbjct: 173 IAMGLAGLAGGALIGLTGGLAAPFVAAGLGTLFAGLGLGTMIGATYLGTLITSAP 227


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = +1

Query: 10  GIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 189
           G+IA + +++   IAG +          G ++ G  L      LA GF I   GD  V  
Sbjct: 200 GVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTSGDVCVSN 253

Query: 190 T 192
           T
Sbjct: 254 T 254


>SPAC328.08c |||tubulin specific chaperone cofactor C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 571 RFDRFYKKFLVKIYRFTSLDASSRSNK 491
           +F    K+FL K+Y+ T  + +SRS K
Sbjct: 4   KFVELRKEFLTKLYKSTPSEQTSRSEK 30


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 287 VQVDGDDKSVK--PNTSAKIRIRIIPTNNLGC*AVPRTPA 174
           ++VD D K  K  P+ + +IR+ + P N +     P  PA
Sbjct: 173 IRVDSDSKDAKSVPSENGRIRVSMSPQNEIN--FTPENPA 210


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = -1

Query: 194 AVPRTPASPTMPMA----KPAARPENPTAKPAPK 105
           +VP+ PA+P +P A    +P A P  P    AP+
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQ 546


>SPAC4D7.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 281

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 276 WRR*VRKAQYFSENKNKNHSDE*PRLLSSTT 184
           W+  V K+QY +EN N N  +  P L S+TT
Sbjct: 241 WKDLVWKSQYATENANTNSINNSP-LSSNTT 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,719
Number of Sequences: 5004
Number of extensions: 65303
Number of successful extensions: 204
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)