Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060594.seq
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 108 4e-24
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 108 4e-24
05_01_0043 - 295041-295173,296252-296537,296616-296697 108 5e-24
01_07_0267 + 42410174-42410252,42410679-42411097 104 6e-23
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 73 2e-13
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 55 6e-08
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 36 0.023
07_03_1215 + 24937016-24937229,24937418-24937623,24938135-249382... 32 0.49
04_01_0244 - 3194141-3195091,3195301-3195312 32 0.49
10_08_1035 - 22466674-22466855,22467171-22467373,22467541-224677... 31 1.1
12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001 30 1.5
09_06_0081 + 20745627-20748144,20748211-20748308 29 2.6
07_01_0469 - 3552409-3553368 29 2.6
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 29 2.6
03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319 29 2.6
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 3.4
03_06_0209 - 32377045-32378008,32378086-32378210,32378772-323788... 29 3.4
09_06_0223 + 21659549-21659729,21659888-21659979 29 4.5
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 29 4.5
04_04_1125 + 31085106-31085714 29 4.5
04_04_0593 - 26480036-26481438,26481915-26482083 29 4.5
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609... 29 4.5
03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826 28 6.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 7.9
04_03_0301 + 14094370-14094584,14096694-14096727,14098084-140980... 28 7.9
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 28 7.9
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 28 7.9
01_01_0113 + 842543-843191,844964-844987,845202-846274 28 7.9
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 108 bits (260), Expect = 4e-24
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 GIIAIYGLVVAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 186
G++ IYGL++AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AIGIVGDAGVR
Sbjct: 63 GVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 122
Query: 187 GTAQQPRLFVGMILILIFAEVLGFTDL 267
AQQP+LFVGMILILIFAE L L
Sbjct: 123 ANAQQPKLFVGMILILIFAEALALYGL 149
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 108 bits (260), Expect = 4e-24
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 GIIAIYGLVVAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 186
G++ IYGL++AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AIGIVGDAGVR
Sbjct: 63 GVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 122
Query: 187 GTAQQPRLFVGMILILIFAEVLGFTDL 267
AQQP+LFVGMILILIFAE L L
Sbjct: 123 ANAQQPKLFVGMILILIFAEALALYGL 149
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 108 bits (259), Expect = 5e-24
Identities = 53/87 (60%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 GIIAIYGLVVAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 186
G++ IYGL++AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AIGIVGDAGVR
Sbjct: 64 GVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 123
Query: 187 GTAQQPRLFVGMILILIFAEVLGFTDL 267
AQQP+LFVGMILILIFAE L L
Sbjct: 124 ANAQQPKLFVGMILILIFAEALALYGL 150
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 104 bits (250), Expect = 6e-23
Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
Frame = +1
Query: 10 GIIAIYGLVVAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 186
G++ IYGL++AV+I + A Y + G +HL AGLA G LAAG AIG+VGDAGVR
Sbjct: 63 GVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAGVR 122
Query: 187 GTAQQPRLFVGMILILIFAEVLGFTDL 267
AQQP+LFVGMILILIFAE LG L
Sbjct: 123 ANAQQPKLFVGMILILIFAEALGLYGL 149
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 72.9 bits (171), Expect = 2e-13
Identities = 34/60 (56%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Frame = +1
Query: 10 GIIAIYGLVVAVLIAGALQEPAN-YPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 186
G++ IYGL++AV+I+ + A Y L+ G+ HL +GLA G +GLAAG AIGIVGDAGVR
Sbjct: 65 GVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVR 124
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 54.8 bits (126), Expect = 6e-08
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Frame = +1
Query: 16 IAIYGLVVAVLIAGALQEP----ANYP--LYKGFIHLGAGLAVGFSGLAAGFAIGIVGDA 177
+AIYG++VA+++ L+ ++P L G+ +GL VGF+ L G +GI+G +
Sbjct: 71 VAIYGVIVAIILQTKLESVPTALVHHPESLRAGYAIFASGLIVGFANLVCGVCVGIIGSS 130
Query: 178 GVRGTAQQPRLFVGMILILIFAEVLG 255
AQ LFV +++I IF LG
Sbjct: 131 CALSDAQNSSLFVKILVIEIFGSALG 156
>01_06_0836 - 32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 36.3 bits (80), Expect = 0.023
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = -3
Query: 240 ENKNKNHSDE*PRLLSSTTHACISHDAYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLE 61
E +KN DE P LS+T C H+ YG+ G + + ++ VD P+V G+V +
Sbjct: 880 EKCSKNEHDEAPLGLSNT---CKEHE-YGDKGPENLTKPGEPASSVDVPYVNGIVD-NSD 934
Query: 60 GTSNQDSHDQTVDGNNT 10
+ S + TV T
Sbjct: 935 SVQEEPSVEATVSATET 951
>07_03_1215 +
24937016-24937229,24937418-24937623,24938135-24938207,
24938619-24938812
Length = 228
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 161 PMAKPAARPENPTAKPAPKWM 99
P AKPAA+P+ P KP P+ M
Sbjct: 91 PAAKPAAKPKKPPVKPLPEMM 111
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 257 KPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 108
+ T+A +RI++ P N P PA+P +P A PAA P AP
Sbjct: 196 RKTTTAPVRIQLAPRNP----PPPAAPAAPPVPPAVPAAPAPAPVHMSAP 241
>10_08_1035 -
22466674-22466855,22467171-22467373,22467541-22467729,
22467847-22467962,22468650-22468764,22469055-22469156,
22469225-22469361
Length = 347
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 172 DAGVRGTAQQPRLFVGMILILIFAEVLGFTDLSSPS--TCTQNKRPEHTPLPSPVLRASM 345
DAG R L ++++ + GF ++ TC +K+ +H +P+PVL+ +
Sbjct: 65 DAGERQHVDLVLLTNREVMVVAIHNISGFVEVDKDGNWTCPSDKKNKHGVIPNPVLQVNR 124
Query: 346 L 348
L
Sbjct: 125 L 125
>12_01_0229 + 1731288-1732513,1733037-1733106,1733267-1734001
Length = 676
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +1
Query: 58 ALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILI 231
AL+ P P+ +G + LG + V +GL +V A VRG GM+L+
Sbjct: 333 ALEAP---PMPRGSVGLGMAVRVAMAGLGTNRVAAVVSAAAVRGHNAGGGALEGMVLV 387
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -1
Query: 236 IRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPA 111
+R R PT+ A PR P P A PAA P P+ P+
Sbjct: 701 LRARRAPTSPPAA-ATPRAPTPPAAAAAAPAAPPALPSGLPS 741
>07_01_0469 - 3552409-3553368
Length = 319
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 257 KPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 108
+ +T+A +RI++ P N PA+P +P A PA P P P P
Sbjct: 192 RKSTTAPVRIQLAPRNP----PPSAAPAAPPVPPAAPAV-PAAPALAPVP 236
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -1
Query: 188 PRTPASPTMPMAKPAARPENPTAKPAPKWMNPL 90
P PA MP P P PT P P W PL
Sbjct: 132 PPPPARTPMPTPTPTPTP-TPTRPPVPVWAAPL 163
>03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319
Length = 317
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 54 WCPPGASQLPPLQRVHPLG 110
W PPG +LPPL +H G
Sbjct: 44 WAPPGEPRLPPLLLIHGFG 62
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 194 AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPL 90
A P P P P PAA P P PAP+ P+
Sbjct: 219 APPPPPPPPPSPHRHPAAHPPPPPHHPAPRPPPPM 253
>03_06_0209 -
32377045-32378008,32378086-32378210,32378772-32378816,
32379009-32379295,32379778-32381509,32381631-32381971,
32383753-32383876,32384484-32384722,32385156-32385534
Length = 1411
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 52 AGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVR 186
+GA EP P+ + G A+ F G AG A+G+VG++G R
Sbjct: 9 SGAAAEPPPTPVAR----YDRGGALIFGGRFAGVAVGVVGESGSR 49
>09_06_0223 + 21659549-21659729,21659888-21659979
Length = 90
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 393 YRRRPSLCASSDSDNEHRGSEHGRRE 316
++RR S DNE +G +HGRRE
Sbjct: 35 WQRRKRDTNGSGKDNEGKGGQHGRRE 60
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 374 CARLQTQIMSIEA--RSTGDGSGVCSGR 297
C+R++TQ+ ++A R+TG G G +GR
Sbjct: 529 CSRMKTQMSKMKAARRATGGGGGAAAGR 556
>04_04_1125 + 31085106-31085714
Length = 202
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 188 PRTPASPTMPMAKPAARPENPTAK 117
P TPA+PT P PA P PT K
Sbjct: 89 PATPATPTTP-PTPAPAPSTPTGK 111
>04_04_0593 - 26480036-26481438,26481915-26482083
Length = 523
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 112 AGLAVGFSGLAAGFAIGIVGDAGVRGT-AQQPRLFVGMILILIFAEVLGFTDLS 270
AG+ +GF + + I + A RGT P + + + ++L + F+ LS
Sbjct: 140 AGVGIGFGAMVSAVYIAEISPAAARGTLTSLPEICINLGILLGYVSNYAFSGLS 193
>03_02_0168 +
6094658-6096220,6096335-6096608,6096671-6096821,
6097052-6097262,6097344-6097550,6097982-6098350
Length = 924
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 3 ARGYYCHLRSGRGCPDCWCPPGASQLPPL 89
A+GYY +G+ D WC PGAS P +
Sbjct: 453 AKGYYVKDATGKDF-DGWCWPGASSYPDM 480
>03_04_0170 - 17982970-17983410,17983535-17983672,17983815-17983826
Length = 196
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 100 IHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 204
+HL G+AVG GL G + GD R A+ P
Sbjct: 160 VHLDVGVAVGDQGLEVGLL--VAGDEAERAQARAP 192
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 188 PRTPASPTMPMAKPAARPENPTAKPAPKWM 99
P PA P P AA NP A P P M
Sbjct: 727 PSAPAPPLPPPLPAAANKRNPPAPPPPPLM 756
>04_03_0301 +
14094370-14094584,14096694-14096727,14098084-14098095,
14098400-14098574,14099064-14099299,14099396-14100457
Length = 577
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 123 SQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTL 7
S+ ++ E KG+VG SNQ HD T D +T+
Sbjct: 190 SRLDNKIAEVDTKGIVG-TKPSASNQHQHDGTTDSRHTV 227
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 321 VARAPSLYAHYLSLKTRTGM---VVAGSGSTLH-RVSEHPSTLVYYICSL 458
+ R+P + H LSL + GM +VA GS H + E+PS ++ + S+
Sbjct: 21 IGRSPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSV 70
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -3
Query: 156 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTS 52
G G S+T VD+P VVGW GTS
Sbjct: 4 GGGGGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTS 38
>01_01_0113 + 842543-843191,844964-844987,845202-846274
Length = 581
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 557 LQKVFSKNIQIHVSRCEQPQQQGCTGLEICENE 459
LQK+ SKN V + + PQ QG T L +C +
Sbjct: 110 LQKLMSKNQSTSVYKPQGPQSQGAT-LVVCSRD 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,160,903
Number of Sequences: 37544
Number of extensions: 507039
Number of successful extensions: 1948
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1941
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -