Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060594.seq
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 3e-31
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 33 0.28
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24) 31 0.66
SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016) 31 1.1
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06) 31 1.1
SB_51968| Best HMM Match : PT (HMM E-Value=0.54) 31 1.1
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 1.5
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 30 2.0
SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1) 29 2.7
SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 2.7
SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 2.7
SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9) 29 3.5
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.1
SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 6.1
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.1
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 28 6.1
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 132 bits (318), Expect = 3e-31
Identities = 68/86 (79%), Positives = 74/86 (86%)
Frame = +1
Query: 10 GIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 189
GIIAIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLAAGFAIGIVGDAGVRG
Sbjct: 62 GIIAIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLAAGFAIGIVGDAGVRG 119
Query: 190 TAQQPRLFVGMILILIFAEVLGFTDL 267
TAQQPRLFVGMILILIFAEVLG L
Sbjct: 120 TAQQPRLFVGMILILIFAEVLGLYGL 145
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 32.7 bits (71), Expect = 0.28
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Frame = -1
Query: 377 PCARLQTQIMSIEAR-------STGDGSGVC---SGRLFCVQVDGDDKSVKPNTSAKIRI 228
P A +Q+Q+ + R + G+ S +C GR C DGDD SV+P TS +R
Sbjct: 3715 PLAIVQSQLQRLPKRDINPCTIANGNCSHLCLSVGGRAICACPDGDDNSVQPCTSGGVRT 3774
Query: 227 RI 222
I
Sbjct: 3775 LI 3776
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.66
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 109 GAGLAVGFSGLAAGFAIGIVG 171
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
Length = 346
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/55 (36%), Positives = 26/55 (47%)
Frame = -1
Query: 275 GDDKSVKPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPA 111
GD + KP+ K+ R+ A +TPA+ T P PAA PTA PA
Sbjct: 262 GDQQEAKPDEDGKLAFRLFDRFMR---AQRKTPAATTPPTGSPAATTP-PTAAPA 312
>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
Length = 486
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 400 PPCIGFRSTLPLLYITFVPCSFSHISRPVQPCCCGCSHLET*IC 531
P C G T L Y F PC+ + I RP+ C C L+ +C
Sbjct: 165 PKC-GKHLTKALCYHLFPPCTKNAIQRPIYICKAQCEILKGSVC 207
>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
Length = 295
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 230 IRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 108
++I+P N + PR P + T P P P PT P P
Sbjct: 205 VKILPGNGVVPTQAPRPPTTQTPPTKAPTDPPVPPTNPPVP 245
>SB_51968| Best HMM Match : PT (HMM E-Value=0.54)
Length = 514
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -1
Query: 257 KPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAPKWMNPL 90
KP T+ K R PT +L + +PT AKP PT +P K PL
Sbjct: 135 KPKTTVKRRPTERPTKSLLPEEEEKERQTPTPTKAKPTTIKRRPTERPTKKPTKPL 190
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 156 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 25
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 156 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 25
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 182 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 90
TPA PT+PMA A + P+ PA PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 190 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 20
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_54954| Best HMM Match : zf-RanBP (HMM E-Value=2.1)
Length = 172
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 275 GDDKSVKPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPA 111
GD + KP+ ++ R+ A +TPA+ T P PAA PTA PA
Sbjct: 87 GDQQEAKPDEDGQLAFRLFDRFMR---AQRKTPAATTPPTGAPAATTP-PTAAPA 137
>SB_47880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 275 GDDKSVKPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPA 111
GD + KP+ ++ R+ A +TPA+ T P PAA PTA PA
Sbjct: 154 GDQQEAKPDEDGQLAFRLFDRFMR---AQRKTPAATTPPTGAPAATTP-PTAAPA 204
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 175 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 41
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_12790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 275 GDDKSVKPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPA 111
GD + KP+ ++ R+ A +TPA+ T P PAA PTA PA
Sbjct: 40 GDQQEAKPDEDGQLAFRLFDRFMR---AQRKTPAATTPPTVAPAATTP-PTAAPA 90
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 179 PASPTMPMAKPAARPENPTAKPAPK 105
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 179 PASPTMPMAKPAARPENPTAKPA 111
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_42153| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 275 GDDKSVKPNTSAKIRIRIIPTNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPA 111
GD + KP+ ++ R+ A +TPA+ T P PAA PTA PA
Sbjct: 40 GDQQEAKPDEDGQLAFRLFDRFMR---AQRKTPAATTPPTGAPAATTP-PTAAPA 90
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 179 PASPTMPMAKPAARPENPTAKPAPK 105
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 179 PASPTMPMAKPAARPENPTAKPA 111
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_37047| Best HMM Match : Drf_FH1 (HMM E-Value=4.9)
Length = 233
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 218 PTNNLGC*AVPRTPASP--TMPMAKPAARPENPTAKPAP 108
P+NN G A P TPA+P M +A P+ T P P
Sbjct: 87 PSNNFGTPATPATPATPAHNMGVAGPSGMATPGTFIPPP 125
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 191 VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 93
+P TP P P P RP PT +P P P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 182 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 90
TPA PT+P A A + P+ PA PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_51617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 403
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 502 GCSHLET*ICIFLLKTFCKNDQTSIMVLLKHECYRAMTPQY 624
GCSH + +F+ + F + T+ + LL +CY A+ Y
Sbjct: 163 GCSHFTWDVVLFITEVFLTSSLTN-LCLLTLDCYLAVVHPY 202
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 182 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 90
TPA PT+P A A + P+ PA PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 182 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 90
TPA PT+P A A + P+ PA PL
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -1
Query: 215 TNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNP 93
+NN G A P TPA+ +P+A P+ A P T PAP + P
Sbjct: 220 SNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPP 261
>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 469 HISRPVQPCCCGC 507
H+ PV PCCC C
Sbjct: 77 HVELPVSPCCCLC 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,691,321
Number of Sequences: 59808
Number of extensions: 556695
Number of successful extensions: 1847
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1841
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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