Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060594.seq
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   154   6e-40
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.3  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  154 bits (374), Expect = 6e-40
 Identities = 76/86 (88%), Positives = 79/86 (91%)
 Frame = +1

Query: 10  GIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 189
           GIIAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLAAGFAIGIVGDAGVRG
Sbjct: 62  GIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLAAGFAIGIVGDAGVRG 121

Query: 190 TAQQPRLFVGMILILIFAEVLGFTDL 267
           TAQQPRLFVGMILILIFAEVLG   L
Sbjct: 122 TAQQPRLFVGMILILIFAEVLGLYGL 147



 Score = 29.5 bits (63), Expect = 0.031
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 249 IGLYGLIVAIYLY 287
           +GLYGLIVAIYLY
Sbjct: 142 LGLYGLIVAIYLY 154


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 478  RPVQPCCCGCSHLET 522
            RPV  C  GC+ +ET
Sbjct: 1706 RPVVSCASGCTAVET 1720


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 674 CSLLSPKLKHMCNKLIKY 621
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 674 CSLLSPKLKHMCNKLIKY 621
           C+  + K KH  NK++ Y
Sbjct: 72  CNKCNEKQKHTANKVVNY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,824
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)