Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060593.seq
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    98   1e-21
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    82   6e-17
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   2.5  
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        27   2.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.4  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    26   5.8  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    26   5.8  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    26   5.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   7.7  

>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 97.9 bits (233), Expect = 1e-21
 Identities = 40/80 (50%), Positives = 59/80 (73%)
 Frame = +3

Query: 240 RKEVNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLL 419
           ++++ E+  E HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+  +C  ++
Sbjct: 71  KRKLTEVFNEAHENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMV 130

Query: 420 GKIKPTAAALSLIKGFDIAE 479
           G I+P A  +S IKG  +++
Sbjct: 131 GLIRPGAVGISCIKGVAVSK 150



 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 28/49 (57%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
 Frame = +1

Query: 103 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIE 240
           +PK ++ I  VGSGNWG+AIAKI G NA A   +F  +V MWV+EE IE
Sbjct: 18  RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIE 66



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 24/42 (57%), Positives = 28/42 (66%)
 Frame = +1

Query: 478 KVGHRSYITYFTRCLKIPCAVLMGANIASEVAEEKFCETTIG 603
           K G R Y    +  L I C VL GAN+A+EVA E+FCETTIG
Sbjct: 150 KEGVRLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIG 191


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 82.2 bits (194), Expect = 6e-17
 Identities = 40/81 (49%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
 Frame = +3

Query: 243 KEVN--EIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTL 416
           KE N  E+   THENVKYL G K PSNV A PD+ +    +D+L++V+PHQFV  IC+ L
Sbjct: 72  KECNLTEVFNTTHENVKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQL 131

Query: 417 LGKIKPTAAALSLIKGFDIAE 479
            G +K  A A+S IKG  + +
Sbjct: 132 KGCLKKDAVAISCIKGVSVTK 152



 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +1

Query: 118 VCIVGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIE 240
           V I+GSGNWG+AIAKI G NA A    F  +V MW+YEE I+
Sbjct: 27  VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQ 68



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +1

Query: 532 CAVLMGANIASEVAEEKFCETTIG 603
           C VL GANIASEVA+EKFCETTIG
Sbjct: 170 CGVLSGANIASEVAQEKFCETTIG 193


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 387 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 479
           + +R IC T+ G ++ +   + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 641 ISRINGASITSRXPMVVSQNFSSATSDAILAPINTAQGIFRHLVKY 504
           + R+N  S TS+ P            D++ A  +TA G  +HL ++
Sbjct: 292 LERLNDISSTSQFPSERFNALEKLLHDSLSAQSSTADGTSKHLAEF 337


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 302  VARQVFNIFMSFXDYFVNFFPSIISSYTHIVTL 204
            V  Q  N+  S  DYF+N   S + S + I TL
Sbjct: 3851 VCEQFINLAESVLDYFINVHNSNLDSLSKISTL 3883


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
 Frame = +3

Query: 288 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 443
           Y+PG +    V AV D VEA  K  D ++++ P     Q+     T+ S +  KI    A
Sbjct: 59  YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118

Query: 444 ALSLIKG 464
           + +L++G
Sbjct: 119 SAALLQG 125


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 254 VNFFPSIISSYTHIVTLSSKFDR 186
           ++  PSIISSYT +  L++K  R
Sbjct: 207 ISALPSIISSYTSLAPLNTKLYR 229


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/47 (23%), Positives = 28/47 (59%)
 Frame = -2

Query: 612 VPTXNGRFAEFFLSNLRCNIGSH*YSTGNF*ASCKICDIRSMPNLRL 472
           + T +G       ++ + N GS+  +T +  ++C++ D+R+M ++R+
Sbjct: 241 IATLHGHKNTIMQASFQKNFGSNYLATVSRDSTCRVFDLRAMKDVRV 287


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -3

Query: 650 VCMISRINGASITSRXPMVVSQNFSSATSDAILAPI 543
           V   S++   S TS+   +VS+N  SATS +I  PI
Sbjct: 175 VSSASKVASISNTSKPNPIVSENPISATSVSIEIPI 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,242
Number of Sequences: 5004
Number of extensions: 50651
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)