Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060593.seq
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0341 - 42855667-42855849,42855933-42855981,42856165-428562... 95 6e-20
07_01_0874 - 7261191-7261274,7262291-7262440,7262769-7262916,726... 47 1e-05
02_04_0245 + 21262645-21262754,21262851-21262997,21263100-212631... 34 0.091
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675 31 0.85
01_01_0896 + 7060431-7061390,7063562-7064191 30 1.5
11_01_0458 + 3536162-3537794,3537905-3538272 30 2.0
06_03_0298 - 19272257-19273714 29 3.4
08_02_0243 - 14708055-14708416,14708487-14709324,14709482-147103... 29 4.5
02_04_0363 + 22369461-22370127,22370240-22370310,22370412-223709... 28 6.0
11_01_0459 + 3546101-3548771,3548871-3549238 28 7.9
01_06_0966 - 33453963-33456692 28 7.9
>01_07_0341 -
42855667-42855849,42855933-42855981,42856165-42856219,
42856290-42856410,42856495-42856532,42856612-42856675,
42856778-42856885,42857066-42857187,42857544-42857616,
42857700-42857776,42858521-42858632
Length = 333
Score = 94.7 bits (225), Expect = 6e-20
Identities = 42/78 (53%), Positives = 58/78 (74%)
Frame = +3
Query: 243 KEVNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 422
K+++E I + +EN KYLPG KL +NV+A PD+ A KDA++L+FV PHQFV IC L+G
Sbjct: 53 KKLSESINQANENCKYLPGIKLGANVIADPDLENAVKDANMLVFVTPHQFVEGICKKLVG 112
Query: 423 KIKPTAAALSLIKGFDIA 476
K++P +SLIKG +IA
Sbjct: 113 KLRPGTEGISLIKGMEIA 130
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/49 (46%), Positives = 33/49 (67%)
Frame = +1
Query: 91 MADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEII 237
M + KN V ++GSGNWGS ++++ N A L +F D V MWV+EEI+
Sbjct: 1 MENGHAKNLVAVIGSGNWGSVASRLIASNTAKLPSFHDEVRMWVFEEIL 49
>07_01_0874 -
7261191-7261274,7262291-7262440,7262769-7262916,
7263136-7263259,7263452-7263653,7263743-7263848,
7263979-7264442
Length = 425
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +3
Query: 261 IXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTA 440
I +H N KYL H+LP N+ A +A AD VP QF + + + P
Sbjct: 148 INHSHINCKYLRDHRLPENITATTSASDALAGADFCFHAVPVQFSSSFLEGISTHVDPKL 207
Query: 441 AALSLIKGFDI 473
+SL KG ++
Sbjct: 208 PFISLSKGLEL 218
>02_04_0245 +
21262645-21262754,21262851-21262997,21263100-21263156,
21263256-21263442,21264700-21264925,21265474-21266003
Length = 418
Score = 34.3 bits (75), Expect = 0.091
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 73 DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAAS 186
DC +L MAD ++G W S +A+ VG A S
Sbjct: 152 DCTVLTMADDSTIKAKVVIGCDGWNSVVARYVGLGAPS 189
>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
Length = 264
Score = 31.1 bits (67), Expect = 0.85
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 607 DXQWSFRRIFPQQPPMQYWLPL 542
D +W R+F +QPP+++WL +
Sbjct: 93 DSEWVICRVFKKQPPIEHWLEM 114
>01_01_0896 + 7060431-7061390,7063562-7064191
Length = 529
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -1
Query: 625 EPALRPDXQWSFRRIFPQQPPMQYWLPLIQHREFLGIL 512
+PA R D RR P PP + LPL+ H LG L
Sbjct: 29 KPARRDDGDGGMRRRLPPSPP--WGLPLLGHLHLLGAL 64
>11_01_0458 + 3536162-3537794,3537905-3538272
Length = 666
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 281 IFMSFXDYFVNFFPSIISSYTHIVTLSSKFDRLAAFRPTI 162
I + +YF F PS +S+ + +V L+ +F++L P++
Sbjct: 71 ILSLYDNYFTGFIPSSLSNLSQLVALTLQFNKLDGQIPSL 110
>06_03_0298 - 19272257-19273714
Length = 485
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 109 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTM---WVYE 228
K KVC+VG G G A A+ + R +S E R + W+Y+
Sbjct: 2 KKKVCVVGGGLVGLAAARELQREGHDVSVLEQRGGVGGQWLYD 44
>08_02_0243 -
14708055-14708416,14708487-14709324,14709482-14710323,
14710466-14710520,14711535-14711549,14713030-14713033,
14713340-14713424,14714045-14714084
Length = 746
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -3
Query: 581 FSSATSDA-ILAPINTAQGIFRHLVKYVI*DRCPTFGYIKSLNQRQSSCSRLYFSKQSRA 405
F S DA LA N G + VK V+ D ++++ + +Q C R+ FS+ ++
Sbjct: 97 FDSVREDADALALENRVTGTWWSDVKDVMYDVDDIVDFLRAHSYKQRCCDRVLFSRLAQL 156
Query: 404 DCSDKLMRHHKY 369
++ R KY
Sbjct: 157 PLDYRIARRIKY 168
>02_04_0363 +
22369461-22370127,22370240-22370310,22370412-22370978,
22371056-22371301
Length = 516
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 88 DMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFE---DRVTMWVYEE 231
D+ + KVC++G+G G A A+ + R +++ E D W+Y++
Sbjct: 7 DVGKPRASRKVCVIGAGMAGLAAARELRREGHAVTVLEQAGDVGGQWLYDD 57
>11_01_0459 + 3546101-3548771,3548871-3549238
Length = 1012
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 269 FXDYFVNFFPSIISSYTHIVTLSSKFDRLAAFRPTI 162
+ +YF+ F PS +S+ + +V L F++ P++
Sbjct: 423 YENYFIGFIPSSLSNLSQLVYLGLHFNKFDGHIPSL 458
>01_06_0966 - 33453963-33456692
Length = 909
Score = 27.9 bits (59), Expect = 7.9
Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = -3
Query: 308 QFVARQVFNIFMSFXDYFVNFFPSIISSYTHIVTLSSKFDRLAAFRPTI---FAIAEPQF 138
+FVA V +F DYF F ++S +I L + D L + R + +AE +
Sbjct: 2 EFVASIVDAVFRPLKDYFARTFGYVMSCGDYIDLLGHEMDELKSKRDDVKRLVDVAERRG 61
Query: 137 PDPTMQTLFFGCLSAISKILQSRTKYLN*YVTNLEKARLP 18
+ T Q ++ L +S++ + + Y L RLP
Sbjct: 62 MEATSQVKWW--LECVSRLEDAAARIEEEYQARL---RLP 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,264
Number of Sequences: 37544
Number of extensions: 307747
Number of successful extensions: 778
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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