Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060593.seq
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical p...    94   1e-19
Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical pr...    94   1e-19
Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical pr...    94   1e-19
Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical pr...    80   2e-15
Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical pr...    58   8e-09
U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    32   0.44 

>Z22180-10|CAO82052.1|  360|Caenorhabditis elegans Hypothetical
           protein K11H3.1d protein.
          Length = 360

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/74 (55%), Positives = 58/74 (78%)
 Frame = +3

Query: 243 KEVNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 422
           ++++E+I   HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC  L+G
Sbjct: 49  EKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVG 108

Query: 423 KIKPTAAALSLIKG 464
           KI     A+SLIKG
Sbjct: 109 KIPADTQAISLIKG 122



 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 PKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEEIIEG 243
           PK KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EEI+ G
Sbjct: 3   PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNG 48



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +1

Query: 520 LKIPCAVLMGANIASEVAEEKFCETTIGC-RDVMLAPLMRDIIQTD 654
           LKI  +VLMGAN+A EVA + FCE TIGC R     PL++ +  TD
Sbjct: 151 LKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTD 196


>Z22180-2|CAD54146.1|  392|Caenorhabditis elegans Hypothetical
           protein K11H3.1b protein.
          Length = 392

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/74 (55%), Positives = 58/74 (78%)
 Frame = +3

Query: 243 KEVNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 422
           ++++E+I   HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC  L+G
Sbjct: 81  EKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVG 140

Query: 423 KIKPTAAALSLIKG 464
           KI     A+SLIKG
Sbjct: 141 KIPADTQAISLIKG 154



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +1

Query: 55  FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEE 231
           F+YF     I  M+ K    KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EE
Sbjct: 21  FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 76

Query: 232 IIEG 243
           I+ G
Sbjct: 77  IVNG 80



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +1

Query: 520 LKIPCAVLMGANIASEVAEEKFCETTIGC-RDVMLAPLMRDIIQTD 654
           LKI  +VLMGAN+A EVA + FCE TIGC R     PL++ +  TD
Sbjct: 183 LKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTD 228


>Z22180-1|CAA80176.2|  371|Caenorhabditis elegans Hypothetical
           protein K11H3.1a protein.
          Length = 371

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 41/74 (55%), Positives = 58/74 (78%)
 Frame = +3

Query: 243 KEVNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 422
           ++++E+I   HEN+KYLPG  LP+NVVAV D+VE+ + +++L+FVVPHQFV+ IC  L+G
Sbjct: 69  EKLSEVINNRHENIKYLPGKVLPNNVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVG 128

Query: 423 KIKPTAAALSLIKG 464
           KI     A+SLIKG
Sbjct: 129 KIPADTQAISLIKG 142



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
 Frame = +1

Query: 55  FKYFVRDCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEE 231
           F+YF     I  M+ K    KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EE
Sbjct: 9   FRYFGTTSTIATMSPK----KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEE 64

Query: 232 IIEG 243
           I+ G
Sbjct: 65  IVNG 68



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +1

Query: 520 LKIPCAVLMGANIASEVAEEKFCETTIGC-RDVMLAPLMRDIIQTD 654
           LKI  +VLMGAN+A EVA + FCE TIGC R     PL++ +  TD
Sbjct: 162 LKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTD 207


>Z99171-3|CAB16310.1|  374|Caenorhabditis elegans Hypothetical
           protein F47G4.3 protein.
          Length = 374

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 37/72 (51%), Positives = 48/72 (66%)
 Frame = +3

Query: 249 VNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKI 428
           + E I  THEN KYLPG ++P NVVA   ++EA + A +LI VVPHQ +  IC  L GK+
Sbjct: 72  IAETINSTHENPKYLPGRRIPDNVVATSSLLEACQSAHILILVVPHQGIPQICDELRGKL 131

Query: 429 KPTAAALSLIKG 464
           +  A A+SL KG
Sbjct: 132 QKGAHAISLTKG 143



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/46 (47%), Positives = 31/46 (67%)
 Frame = +1

Query: 514 RCLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQT 651
           R L + C+VLMGAN+A EVA+ KFCE TIGC+ +     ++ +  T
Sbjct: 164 RALGVQCSVLMGANLAGEVADGKFCEATIGCKSLKNGEELKKVFDT 209



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 109 KNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMW 219
           + K+ IVG GNWGSAIA +VG+   +    F+  V++W
Sbjct: 21  RKKIAIVGGGNWGSAIACVVGKTVKAQDEVFQPIVSIW 58


>Z22180-9|CAO82051.1|  304|Caenorhabditis elegans Hypothetical
           protein K11H3.1c protein.
          Length = 304

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 28/47 (59%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 PKNKVCIVGSGNWGSAIAKIVGRNAASL-SNFEDRVTMWVYEEIIEG 243
           PK KV I+GSGNWGSAIA+IVG    S    F+  V MWV+EEI+ G
Sbjct: 3   PK-KVTIIGSGNWGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNG 48



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
 Frame = +1

Query: 520 LKIPCAVLMGANIASEVAEEKFCETTIGC-RDVMLAPLMRDIIQTD 654
           LKI  +VLMGAN+A EVA + FCE TIGC R     PL++ +  TD
Sbjct: 95  LKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLKKLFHTD 140



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/26 (53%), Positives = 21/26 (80%)
 Frame = +3

Query: 243 KEVNEIIXETHENVKYLPGHKLPSNV 320
           ++++E+I   HEN+KYLPG  LP+NV
Sbjct: 49  EKLSEVINNRHENIKYLPGKVLPNNV 74


>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 31/111 (27%), Positives = 41/111 (36%)
 Frame = -3

Query: 398 SDKLMRHHKY*KISIFCSFNYIWNSNNIRRQFVARQVFNIFMSFXDYFVNFFPSIISSYT 219
           S K    H Y K+ I CSF +  N +N       + +FN F  F  +F+NF     +   
Sbjct: 96  SQKHFLRHTY-KMPI-CSFQFWINFSNNSTNCKMKIIFNNFKHFPMFFINFLRKRSTPIQ 153

Query: 218 HIVTLSSKFDRLAAFRPTIFAIAEPQFPDPTMQTLFFGCLSAISKILQSRT 66
              T+         F  T     E Q   PTMQ L       + K L   T
Sbjct: 154 STSTIQK--SPAINFDKTHSDFKESQEDSPTMQFLAETTNVVVEKALSKST 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,205,412
Number of Sequences: 27780
Number of extensions: 281782
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)