Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060593.seq
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...   136   1e-34
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.29 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score =  136 bits (330), Expect = 1e-34
 Identities = 63/92 (68%), Positives = 74/92 (80%), Gaps = 1/92 (1%)
 Frame = +3

Query: 243 KEVNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 422
           K++ EII ETHENVKYLPGHKLP N++A+PDVVEAAKDAD+L FVVPHQF++ ICS L G
Sbjct: 49  KKLTEIINETHENVKYLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRICSALFG 108

Query: 423 KIKPTAAALSLIKGFDIAEGWA-SILYHIFYK 515
           KIKPTA  LSLIKGFD  +G    ++ HI  K
Sbjct: 109 KIKPTAIGLSLIKGFDKKQGGGIELISHIISK 140



 Score = 79.8 bits (188), Expect = 2e-17
 Identities = 35/45 (77%), Positives = 40/45 (88%)
 Frame = +1

Query: 109 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEG 243
           K ++CIVGSGNWGS IAKI+G NAA+ SNFEDRVTM+VYEEII G
Sbjct: 4   KLRICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYVYEEIING 48



 Score = 70.5 bits (165), Expect = 1e-14
 Identities = 29/46 (63%), Positives = 39/46 (84%)
 Frame = +1

Query: 520 LKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDY 657
           L IP +VLMGAN+ASEVA E FCETTIGC+D  +AP+++D+++T Y
Sbjct: 142 LHIPVSVLMGANLASEVANEMFCETTIGCKDKNMAPILKDLMETSY 187


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 245 FPSIISSYTHIVTLSSKFDRLAAFRPTIFAIAEPQFP 135
           F S+  ++    T  S F ++ A  PT+F+   P+FP
Sbjct: 332 FWSLRKAFARKKTDYSSFGKILATEPTLFSNVTPKFP 368


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 597  HWXSGRNAGSVNAGY 641
            HW SG N G+   GY
Sbjct: 1423 HWKSGHNGGASLTGY 1437


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 597  HWXSGRNAGSVNAGY 641
            HW SG N G+   GY
Sbjct: 1419 HWKSGHNGGASLTGY 1433


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 248 FFPSIISSYTHIVTLSSKFDRL 183
           FF +   SY HI T S++F R+
Sbjct: 99  FFVNEKQSYFHIATTSNEFIRI 120


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 248 FFPSIISSYTHIVTLSSKFDRL 183
           FF +   SY HI T S++F R+
Sbjct: 99  FFVNEKQSYFHIATTSNEFIRI 120


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 248 FFPSIISSYTHIVTLSSKFDRL 183
           FF +   SY HI T S++F R+
Sbjct: 38  FFVNEKQSYFHIATTSNEFIRI 59


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 601 QWSFRRIFPQQPPMQYWLPLI 539
           QW+ R+  P    +++W+PL+
Sbjct: 486 QWTCRQPEPLIELIEHWMPLL 506


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,316
Number of Sequences: 438
Number of extensions: 3623
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)