Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060593.seq
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD...    93   2e-19
At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate dehy...    61   6e-10
At5g63910.1 68418.m08025 expressed protein                             31   0.94 
At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.2  
At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putat...    28   6.6  
At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.8  
At5g07800.1 68418.m00894 flavin-containing monooxygenase family ...    27   8.8  
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit...    27   8.8  

>At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD+]
           / GPDH strong similarity to  SP|P52425
           Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)
           {Cuphea lanceolata}; contains Pfam profile PF01210:
           NAD-dependent glycerol-3-phosphate dehydrogenase
          Length = 400

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/103 (42%), Positives = 67/103 (65%)
 Frame = +3

Query: 243 KEVNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLG 422
           +++N++I +T+ENVKYLPG KL  NVVA PD+  A KDA++L+FV PHQF+  IC  L G
Sbjct: 100 EKLNDVINKTNENVKYLPGIKLGRNVVADPDLENAVKDANMLVFVTPHQFMDGICKKLDG 159

Query: 423 KIKPTAAALSLIKGFDIAEGWASILYHIFYKMPKNSLCCINGS 551
           KI     A+SL+KG ++ +    ++  +  K    + C + G+
Sbjct: 160 KITGDVEAISLVKGMEVKKEGPCMISSLISKQLGINCCVLMGA 202



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 24/43 (55%), Positives = 32/43 (74%)
 Frame = +1

Query: 109 KNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEII 237
           K+KV +VGSGNWGS  AK++  NA  L +F D V MWV+EE++
Sbjct: 54  KSKVTVVGSGNWGSVAAKLIASNALKLPSFHDEVRMWVFEEVL 96



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 23/30 (76%)
 Frame = +1

Query: 520 LKIPCAVLMGANIASEVAEEKFCETTIGCR 609
           L I C VLMGANIA+E+A EKF E T+G R
Sbjct: 192 LGINCCVLMGANIANEIAVEKFSEATVGYR 221


>At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate
           dehydrogenase family protein low similarity to SP|Q26756
           Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal
           (EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains
           Pfam profile PF01210: NAD-dependent glycerol-3-phosphate
           dehydrogenase
          Length = 420

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = +3

Query: 249 VNEIIXETHENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKI 428
           V + I E H N KY P HKLP NV+A  D   A  DAD  +  VP QF  +    +   +
Sbjct: 124 VCQSINENHHNCKYFPEHKLPENVIATTDAKAALLDADYCLHAVPVQFSSSFLEGIADYV 183

Query: 429 KPTAAALSLIKGFDI-AEGWASILYHIFYKMPKNSLCCINGSQYCI 563
            P    +SL KG ++      S +  I  K P+     ++G  + +
Sbjct: 184 DPGLPFISLSKGLELNTLRMMSQIIPIALKNPRQPFVALSGPSFAL 229


>At5g63910.1 68418.m08025 expressed protein
          Length = 500

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 118 VCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEG 243
           VCIVGSG  GS++A  +   + S    + ++ M+   EI+ G
Sbjct: 38  VCIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGG 79


>At3g50740.1 68416.m05552 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 487

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 82  ILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEG 243
           +LD  +KQP   V  +  G+ GS  AK +   A  L   + R  +WV    ++G
Sbjct: 258 VLDWLNKQPDESVLYISFGSGGSLSAKQLTELAWGLEMSQQRF-VWVVRPPVDG 310


>At4g25970.1 68417.m03737 phosphatidylserine decarboxylase, putative
           similar to SP|P53037 Phosphatidylserine decarboxylase
           proenzyme 2 precursor (EC 4.1.1.65) {Saccharomyces
           cerevisiae}; contains Pfam profile PF02666:
           phosphatidylserine decarboxylase
          Length = 635

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
 Frame = +3

Query: 267 ETHENVKYLPGHKLPSNVVA--VPDVVEAAKDADLLIFV-VPHQFVRTICSTLLGKIKPT 437
           E  +N+    G K+ S   A  +P  +E  KD   +  V  P    +T     + ++KP 
Sbjct: 365 EILQNLSEKQGKKMNSVESAQNIPSFLEFFKDQINMAEVKYPLDHFKTFNEFFVRELKPG 424

Query: 438 AAALSLIKGFDIAEGWASILYHIFYKMPKNSLCCINGSQYCIGGC*GKILRNDHWXSG 611
           A  ++ +   D+A   A      F  +  ++   I G ++ I G  G  +++D +  G
Sbjct: 425 ARPIACMDQDDVAVSAADCRLMAFQSVDDSTRFWIKGRKFSIKGLLGNDVQSDAFLDG 482


>At5g66690.1 68418.m08407 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 481

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 73  DCNILDMADKQPKNKVCIVGSGNWGSAIAKIVGRNAASLSNFEDRVTMWVYEEIIEG 243
           D  +LD  ++QP   V  +  G+ G   AK +   A  L   + R  +WV    ++G
Sbjct: 250 DHPVLDWLNEQPNESVLYISFGSGGCLSAKQLTELAWGLEQSQQRF-VWVVRPPVDG 305


>At5g07800.1 68418.m00894 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenase 2 (FMO2) from Homo
           sapiens [GI:1834493]; contains Pfam profile: PF00743
           Flavin-binding monooxygenase-like
          Length = 460

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +1

Query: 94  ADKQPKNKVCIVGSGNWGSAIAKIV---GRNAASLSNFEDRVTMWVYEEIIE 240
           A +    KVC++G+G  G   A+ +   G     L   ED    W Y+  +E
Sbjct: 8   ASRSRSKKVCVIGAGPAGLVSARELRKEGHKVVVLEQNEDVGGQWFYQPNVE 59


>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
           to SP|Q10567 Adapter-related protein complex 1 beta 1
           subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
           [Drosophila melanogaster] GI:434902; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 893

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 626 GASITSRXPMVVSQNFSSATSDAIL 552
           GAS  +  PMV+SQN S+ ++ ++L
Sbjct: 733 GASARTMMPMVLSQNMSTGSTSSVL 757


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,256,919
Number of Sequences: 28952
Number of extensions: 254754
Number of successful extensions: 689
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)