Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060590.seq
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    58   1e-09
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   7.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 42/144 (29%), Positives = 54/144 (37%), Gaps = 2/144 (1%)
 Frame = +3

Query: 246 PTNNNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 425
           P  NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L G
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161

Query: 426 ISSXXXXXXXXXXXXXXXXXXXSFDQLP-YLYEL*GLQXXXXXXXXXXXXXXXNXINSSK 602
           ISS                   S  Q+P + + +                      +   
Sbjct: 162 ISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRN 221

Query: 603 LKYIIFDPAGGGDP-FYIHIYLDF 671
           L    + P GGGDP  Y H++  F
Sbjct: 222 LNTSFYAPEGGGDPVLYQHLFWFF 245



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 82  ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 255
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 256 II*DFDSYPPPL 291
               F   PP L
Sbjct: 105 NNFTFWLLPPAL 116



 Score = 29.1 bits (62), Expect = 0.62
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 641 PILYPHLFGFFGH 679
           P+LY HLF FFGH
Sbjct: 235 PVLYQHLFWFFGH 247


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 272 TPTPLPYIINFKKNCRKWCRNRMNS 346
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,885
Number of Sequences: 5004
Number of extensions: 31645
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)