Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060589.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 189 4e-49
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 188 5e-49
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 188 5e-49
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 105 6e-24
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 101 1e-22
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 73 4e-14
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.002
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.007
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.007
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.013
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.029
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 31 0.20
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.27
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.47
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.47
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 29 0.63
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 27 2.5
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3... 27 2.5
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 27 2.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.3
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 4.4
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 26 4.4
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 5.8
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 189 bits (460), Expect = 4e-49
Identities = 91/142 (64%), Positives = 107/142 (75%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQT 133
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPI 615
REHALLA+TLGVKQLIV VNKMD+ + ++ + +++G+NP V FVP+
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 616 SGWHGDNMLELQPKCLGSXGWQ 681
SG+ GDNM+E GWQ
Sbjct: 192 SGFQGDNMIEPTTNMPWYQGWQ 213
Score = 146 bits (354), Expect = 3e-36
Identities = 67/72 (93%), Positives = 69/72 (95%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 218 DKLKAERELGIT 253
DKLKAERE GIT
Sbjct: 61 DKLKAERERGIT 72
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 188 bits (459), Expect = 5e-49
Identities = 90/142 (63%), Positives = 107/142 (75%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQT 133
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPI 615
REHALLA+TLGVKQLIV VNKMD+ + ++ + +++G+NP V FVP+
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 616 SGWHGDNMLELQPKCLGSXGWQ 681
SG+ GDNM+E GWQ
Sbjct: 192 SGFQGDNMIEPTTNMPWYQGWQ 213
Score = 146 bits (354), Expect = 3e-36
Identities = 67/72 (93%), Positives = 69/72 (95%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 218 DKLKAERELGIT 253
DKLKAERE GIT
Sbjct: 61 DKLKAERERGIT 72
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 188 bits (459), Expect = 5e-49
Identities = 90/142 (63%), Positives = 107/142 (75%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQT
Sbjct: 74 DIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQT 133
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPI 615
REHALLA+TLGVKQLIV VNKMD+ + ++ + +++G+NP V FVP+
Sbjct: 134 REHALLAYTLGVKQLIVAVNKMDTTGWSQAR--FEEIVKETSNFIKKVGFNPKTVPFVPV 191
Query: 616 SGWHGDNMLELQPKCLGSXGWQ 681
SG+ GDNM+E GWQ
Sbjct: 192 SGFQGDNMIEPTTNMPWYQGWQ 213
Score = 146 bits (354), Expect = 3e-36
Identities = 67/72 (93%), Positives = 69/72 (95%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 218 DKLKAERELGIT 253
DKLKAERE GIT
Sbjct: 61 DKLKAERERGIT 72
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 105 bits (252), Expect = 6e-24
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Frame = +1
Query: 274 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 453
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 454 AFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRL-GYNPAA-VAFVPISGWH 627
A T G+ L+V +NKMD + ++ K RR+ GYN V ++P+S +
Sbjct: 371 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYT 430
Query: 628 GDNM 639
G N+
Sbjct: 431 GQNV 434
Score = 83.0 bits (196), Expect = 4e-17
Identities = 37/68 (54%), Positives = 49/68 (72%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 229
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 230 AERELGIT 253
ERE G T
Sbjct: 296 EEREKGKT 303
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 101 bits (242), Expect = 1e-22
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQT
Sbjct: 244 DVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQT 303
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKY--PHTSRRLGYNPAAVAFV 609
REHA L LG+ +++V VNK+D M+ S D + + + +G+ + V FV
Sbjct: 304 REHAYLLRALGISEIVVSVNKLDLMSW---SEDRFQEIKNIVSDFLIKMVGFKTSNVHFV 360
Query: 610 PISGWHGDNMLE 645
PIS G N+++
Sbjct: 361 PISAISGTNLIQ 372
Score = 77.0 bits (181), Expect = 2e-15
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 229
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 230 AERELGIT 253
ER G+T
Sbjct: 235 EERARGVT 242
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 72.9 bits (171), Expect = 4e-14
Identities = 35/78 (44%), Positives = 52/78 (66%)
Frame = +1
Query: 271 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 450
++ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 451 LAFTLGVKQLIVGVNKMD 504
LA +GVKQ++V +NK+D
Sbjct: 163 LARQVGVKQIVVYINKVD 180
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/70 (35%), Positives = 34/70 (48%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 223
++K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 224 LKAERELGIT 253
E+ GIT
Sbjct: 94 APEEKARGIT 103
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.002
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 292 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 471
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 472 KQLIVGVNKMD 504
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 289 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 384
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.007
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 289 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 384
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.7 bits (76), Expect = 0.013
Identities = 27/79 (34%), Positives = 37/79 (46%)
Frame = +1
Query: 274 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 453
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R + +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRYNVP 199
Query: 454 AFTLGVKQLIVGVNKMDSM 510
+ VNKMD M
Sbjct: 200 RISF--------VNKMDRM 210
Score = 32.3 bits (70), Expect = 0.067
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
NI + H+DSGK+T T ++Y G I K+ E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 242 LGIT 253
GIT
Sbjct: 111 KGIT 114
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.029
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 274 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 30.7 bits (66), Expect = 0.20
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +1
Query: 265 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.27
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 289 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.47
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 301 IIDAPGHRDFIKNMITGTSQADCAVLIV 384
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.5 bits (63), Expect = 0.47
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGD----TVMDYLPAERQ 76
Query: 242 LGIT 253
GIT
Sbjct: 77 RGIT 80
Score = 29.1 bits (62), Expect = 0.63
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 474
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 475 QLIVGVNKMD 504
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.63
Identities = 23/66 (34%), Positives = 31/66 (46%)
Frame = -1
Query: 378 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIVVIPSSRSAFSLSNTQAYL 199
EH+A+ L S +L IS R N GNI L S + +V S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 198 KDPLPI 181
K LPI
Sbjct: 62 KALLPI 67
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 342 HVLDEISVSRSINDGNIVLASFELPESNIVVIPSSRSAFS 223
+ +D+ SV R +N + + ELPE V + R AFS
Sbjct: 607 YTIDDDSVERIMNCIRAIYSFEELPEFQTVFLDDMRKAFS 646
>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 218 DKLKAERELGITTILLSGSSKLASTMLPS 304
D +KA RELG+ ++ G L ++ +PS
Sbjct: 66 DMIKAARELGLNAYVIPGEKLLDASEIPS 94
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 339 VLDEISVSRSINDGNIVLASFELPESNIVVIPSSRSAFSLSN 214
V D + SIN N++ A + +P + +PSS +F L N
Sbjct: 87 VYDTLQELMSINSINMLYAFYYMPSGDEEKLPSSWKSFLLEN 128
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 304 IDAPGHRDFIKNMITGTSQADCAVLIV 384
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 253 NDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 390
ND ++K + + + + PGH D I+++ S LI A
Sbjct: 192 NDAYIYKQNSHGKWKKVAELPGHTDLIRDICWAPSMGSSYYLIATA 237
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 4.4
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = -1
Query: 504 IHFVYSYDELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAI--SLRGSCDHVLD 331
+H YS+ +L D + E+E + V +DT +EF D I + + D +
Sbjct: 104 LHLRYSFSQLQDFDEENEA---VHMIVPKDT-YEFEVPYHADIPKLIWQTSKDPFDREVM 159
Query: 330 EISVSRSINDGNIVLASFELPESNIVVIPSSRSAFSLSNTQAYLKDPLPISWASFSNF 157
+ + IN + A + +S +VI S + +QAY PLP+ A F +
Sbjct: 160 KYTRFWRINHPSYSHAVLDDEQSKALVISSFGDSSVSKISQAYAMMPLPVLKADFFRY 217
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 312 SINDGNIVLASFELPESNIVVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 133
S++ + L S+ P S + + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 224 VCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWWWT 96
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,448
Number of Sequences: 5004
Number of extensions: 60394
Number of successful extensions: 254
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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