Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060589.seq
(684 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 2e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 103 1e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 77 2e-14
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.093
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.16
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.38
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 31 0.87
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.0
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.0
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0) 29 3.5
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09) 28 6.1
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 28 6.1
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 28 6.1
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6) 28 6.1
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.1
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (271), Expect = 2e-25
Identities = 52/94 (55%), Positives = 68/94 (72%), Gaps = 2/94 (2%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQT
Sbjct: 2 DVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQT 61
Query: 436 REHALLAFTLGVKQLIVGVNKMDS--MNHHTVSP 531
REHA+L +LGV QLIV +NK+D + +H P
Sbjct: 62 REHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 103 bits (247), Expect = 1e-22
Identities = 47/106 (44%), Positives = 68/106 (64%)
Frame = +1
Query: 274 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 453
F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276
Query: 454 AFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNP 591
A T GVK L++ VNKMD + + K +++G+NP
Sbjct: 277 AKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +2
Query: 122 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERELGIT 253
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+ G T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNT 209
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 184
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 76.6 bits (180), Expect = 2e-14
Identities = 33/35 (94%), Positives = 34/35 (97%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 360
DIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 26 DIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +2
Query: 182 MGKGSFKYAWVLDKLKAERELGIT 253
MGKGSFKYAWVLDKLKAERE GIT
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGIT 24
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.093
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 474
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 475 QLIVGVNKMD 504
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +1
Query: 304 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 483
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 484 VGVNKMD 504
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 32.3 bits (70), Expect = 0.38
Identities = 24/64 (37%), Positives = 29/64 (45%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 242 LGIT 253
GIT
Sbjct: 1987 RGIT 1990
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 289 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/85 (25%), Positives = 33/85 (38%)
Frame = +1
Query: 259 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 438
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 439 EHALLAFTLGVKQLIVGVNKMDSMN 513
E A GV +I +NK+D N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 301 IIDAPGHRDFIKNMITGTSQADCAVLIV 384
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 53 THINIVVIGHVDSGKSTTTGHLIY 124
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 490
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 450 ARFHPRCQTAHRRSKQNGFHEPPYSEPRFEEIKK 551
A F PR + +R ++N H PYS+ EE +K
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHEEERK 151
>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
Length = 895
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +2
Query: 35 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
+ GKEK H+N + ++ S S H Y ++ + E+ E K AW
Sbjct: 529 RTGKEKDHVNYKRLRNIVSN-SIKESHNNYV-----SEIMKGIDLESDEPRPNGVKRAWS 582
Query: 215 LDKLKAERELGITTILLSG 271
KL LGI T+ G
Sbjct: 583 YLKLLRSESLGIPTLFWEG 601
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +2
Query: 35 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
+ GKEK H+N + ++ S S H Y ++ + E+ E K AW
Sbjct: 374 RTGKEKDHVNYKRLRNIVSN-SIKESHNNYV-----SEIMKGIDLESDEPRPNGVKRAWS 427
Query: 215 LDKLKAERELGITTILLSG 271
KL LGI T+ G
Sbjct: 428 YLKLLRSESLGIPTLFWEG 446
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 459 HPRCQTAHRRSKQNGFHEPPYSEPRFEEIKKEVSSYIKKIGL 584
H + + RR ++N + + P+FE++K + +S KKI +
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISM 150
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +2
Query: 35 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
+ GKEK H+N + ++ S S H Y ++ + E+ E K AW
Sbjct: 442 RTGKEKDHVNYKRLRNIVSN-SIKESHNNYV-----SEIMKGIDLESDEPRPNGVKRAWS 495
Query: 215 LDKLKAERELGITTILLSG 271
KL LGI T+ G
Sbjct: 496 YLKLLRSESLGIPTLFWEG 514
>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
Length = 291
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +2
Query: 35 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
+ GKEK H+N + ++ S S H Y ++ + E+ E K AW
Sbjct: 157 RTGKEKDHVNYKRLRNIVSN-SIKESHNNYV-----SEIMKGIDLESDEPRPNGVKRAWS 210
Query: 215 LDKLKAERELGITTILLSG 271
KL LGI T+ G
Sbjct: 211 YLKLLRSESLGIPTLFWEG 229
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +1
Query: 346 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSMNHHTV 525
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ +++ HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 526 S 528
+
Sbjct: 849 A 849
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/79 (27%), Positives = 32/79 (40%)
Frame = +2
Query: 35 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
+ GKEK H+N + ++ S S H Y ++ + E+ E K AW
Sbjct: 412 RTGKEKDHVNYKRLRNIVSN-SIKESHNNYV-----SEIMKGIDLESDEPRPNGVKRAWS 465
Query: 215 LDKLKAERELGITTILLSG 271
KL LGI T+ G
Sbjct: 466 YLKLLRSESLGIPTLFWEG 484
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,703,721
Number of Sequences: 59808
Number of extensions: 452487
Number of successful extensions: 1362
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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