Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060589.seq
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 202 2e-52
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 202 2e-52
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 153 1e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 151 5e-37
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 3e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 124 4e-29
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 124 4e-29
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 116 2e-26
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 4e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 4e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 67 1e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 67 1e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 67 1e-11
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 43 2e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 42 5e-04
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.062
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 35 0.062
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.11
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.14
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.19
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 33 0.19
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.25
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.25
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.77
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.77
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.3
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.3
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 2.3
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 2.3
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 4.1
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 9.4
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 27 9.4
AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical ... 27 9.4
AC024808-3|AAK29925.1| 183|Caenorhabditis elegans Hypothetical ... 27 9.4
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 202 bits (492), Expect = 2e-52
Identities = 98/143 (68%), Positives = 109/143 (76%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQT
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQT 133
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPI 615
REHALLA TLGVKQLIV NKMDS + + +++GYNP AV FVPI
Sbjct: 134 REHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPI 193
Query: 616 SGWHGDNMLELQPKCLGSXGWQV 684
SG++GDNMLE+ GW V
Sbjct: 194 SGFNGDNMLEVSSNMPWFKGWAV 216
Score = 151 bits (366), Expect = 5e-37
Identities = 70/72 (97%), Positives = 70/72 (97%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERELGIT 253
DKLKAERE GIT
Sbjct: 61 DKLKAERERGIT 72
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 202 bits (492), Expect = 2e-52
Identities = 98/143 (68%), Positives = 109/143 (76%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQT
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQT 133
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPI 615
REHALLA TLGVKQLIV NKMDS + + +++GYNP AV FVPI
Sbjct: 134 REHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPI 193
Query: 616 SGWHGDNMLELQPKCLGSXGWQV 684
SG++GDNMLE+ GW V
Sbjct: 194 SGFNGDNMLEVSSNMPWFKGWAV 216
Score = 151 bits (366), Expect = 5e-37
Identities = 70/72 (97%), Positives = 70/72 (97%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERELGIT 253
DKLKAERE GIT
Sbjct: 61 DKLKAERERGIT 72
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 153 bits (370), Expect = 1e-37
Identities = 70/76 (92%), Positives = 74/76 (97%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQT
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQT 133
Query: 436 REHALLAFTLGVKQLI 483
REHALLA TLGVKQL+
Sbjct: 134 REHALLAQTLGVKQLV 149
Score = 151 bits (366), Expect = 5e-37
Identities = 70/72 (97%), Positives = 70/72 (97%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERELGIT 253
DKLKAERE GIT
Sbjct: 61 DKLKAERERGIT 72
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 151 bits (366), Expect = 5e-37
Identities = 70/72 (97%), Positives = 70/72 (97%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERELGIT 253
DKLKAERE GIT
Sbjct: 61 DKLKAERERGIT 72
Score = 94.7 bits (225), Expect(2) = 2e-30
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 387
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 55.6 bits (128), Expect(2) = 2e-30
Identities = 28/69 (40%), Positives = 37/69 (53%)
Frame = +1
Query: 478 LIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPISGWHGDNMLELQPK 657
L+V NKMDS + + +++GYNP AV FVPISG++GDNMLE+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 658 CLGSXGWQV 684
GW V
Sbjct: 174 MPWFKGWAV 182
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 3e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAER 238
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 124 bits (300), Expect = 4e-29
Identities = 64/130 (49%), Positives = 87/130 (66%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT
Sbjct: 237 DIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQT 296
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPI 615
+EHALL +LGV QLIV VNK+D+++ D K+ +R+ G++ FVP+
Sbjct: 297 KEHALLLRSLGVTQLIVAVNKLDTVDWSQDRFDEIKNNLSV-FLTRQAGFSKP--KFVPV 353
Query: 616 SGWHGDNMLE 645
SG+ G+N+++
Sbjct: 354 SGFTGENLIK 363
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/69 (55%), Positives = 51/69 (73%)
Frame = +2
Query: 47 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 226
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 227 KAERELGIT 253
+ ERE G+T
Sbjct: 227 EEERERGVT 235
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 124 bits (300), Expect = 4e-29
Identities = 64/130 (49%), Positives = 87/130 (66%)
Frame = +1
Query: 256 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 435
DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT
Sbjct: 255 DIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQT 314
Query: 436 REHALLAFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAAVAFVPI 615
+EHALL +LGV QLIV VNK+D+++ D K+ +R+ G++ FVP+
Sbjct: 315 KEHALLLRSLGVTQLIVAVNKLDTVDWSQDRFDEIKNNLSV-FLTRQAGFSKP--KFVPV 371
Query: 616 SGWHGDNMLE 645
SG+ G+N+++
Sbjct: 372 SGFTGENLIK 381
Score = 87.8 bits (208), Expect = 6e-18
Identities = 38/69 (55%), Positives = 51/69 (73%)
Frame = +2
Query: 47 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 226
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 227 KAERELGIT 253
+ ERE G+T
Sbjct: 245 EEERERGVT 253
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 116 bits (279), Expect = 2e-26
Identities = 56/120 (46%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Frame = +1
Query: 274 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 453
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 454 AFTLGVKQLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTSRRLGYNPAA-VAFVPISGWHG 630
T GVK L++ VNKMD ++ K R+LG+NP + +VP SG G
Sbjct: 242 VKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTG 301
Score = 81.4 bits (192), Expect = 5e-16
Identities = 36/71 (50%), Positives = 50/71 (70%)
Frame = +2
Query: 41 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 220
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 221 KLKAERELGIT 253
ERE G T
Sbjct: 164 TNDEEREKGKT 174
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +1
Query: 307 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 486
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 487 GVNKMD 504
+NK D
Sbjct: 167 FINKAD 172
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTT 109
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +1
Query: 307 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 486
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 487 GVNKMD 504
+NK D
Sbjct: 167 FINKAD 172
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTT 109
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 271 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 450
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 451 LAFTLGV--KQLIVGVNKMDSM 510
LA +GV ++V +NK+D +
Sbjct: 159 LARQVGVPLDNIVVFMNKVDEV 180
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 215 LDKLKAER 238
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 271 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 450
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 451 LAFTLGV--KQLIVGVNKMDSM 510
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 215 LDKLKAER 238
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/82 (45%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Frame = +1
Query: 271 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 450
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 451 LAFTLGV--KQLIVGVNKMDSM 510
LA +GV ++V +NK+D +
Sbjct: 160 LARQVGVPLDNIVVFMNKVDEV 181
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 215 LDKLKAER 238
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/86 (30%), Positives = 44/86 (51%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 474
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 475 QLIVGVNKMDSMNHHTVSPDLRKSRR 552
++I+ +NK D +S +K R+
Sbjct: 127 RVIIVLNKCDLAEKSKISESAKKVRK 152
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 59 INIVVIGHVDSGKSTTT 109
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 41.5 bits (93), Expect = 5e-04
Identities = 29/73 (39%), Positives = 34/73 (46%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 474
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 475 QLIVGVNKMDSMN 513
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.062
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +1
Query: 289 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 468
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 469 VKQLIVGVNKMD 504
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 178
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.7 bits (76), Expect = 0.062
Identities = 27/64 (42%), Positives = 32/64 (50%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI---------HVAGHVDKGN----TVTDFLDIERE 73
Query: 242 LGIT 253
GIT
Sbjct: 74 RGIT 77
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 292 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 471
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 472 KQLIVGVNKMD 504
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 497 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 369
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGID 142
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 29.1 bits (62), Expect = 3.1
Identities = 29/92 (31%), Positives = 37/92 (40%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 474
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 475 QLIVGVNKMDSMNHHTVSPDLRKSRRKYPHTS 570
I VNKMD N T L R K H +
Sbjct: 166 PFICFVNKMD-RNGATPLKALDGLRNKLNHNA 196
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 33.1 bits (72), Expect = 0.19
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Frame = +1
Query: 301 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 480
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 481 IVGVNKMDSMNHHTVSP-----DLRKSRRKYPHTSRRLGYNPAAVAF 606
++ +NK+D + + +P +L KS++ + +N V F
Sbjct: 605 VIALNKIDRLYEYESNPRKDVYELLKSQKPRVQAEFKERFNQIVVEF 651
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 289 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 289 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 14 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 124
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 14 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 124
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 280 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 280 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 399
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 140 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 140 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 59 INIVVIGHVDSGKSTTT 109
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical protein
F45E4.4 protein.
Length = 2361
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
+I+ GH+D S GH +K GI E FE E ++ + + + ERE
Sbjct: 1633 SIIPSGHIDQPISLPRGHTGFKPAGIVNED-ELFETERKQREESPTRESGYATSTSYERE 1691
Query: 242 LGI 250
L +
Sbjct: 1692 LAM 1694
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 295 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 390
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 384
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 295 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 384
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = -1
Query: 480 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 322
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 321 VSRSINDGNI 292
S S +D I
Sbjct: 84 FSGSKSDAEI 93
>AC084196-7|AAK29949.2| 284|Caenorhabditis elegans Hypothetical
protein Y55D5A.6 protein.
Length = 284
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Frame = -1
Query: 330 EISVSRSINDGNIVLASFELPESNIVVIPSSRSAFSL------SNTQAYLK--DPLPISW 175
EI + I + ++L +F+LP+ ++ ++P+ + + +N Q L DP+ W
Sbjct: 38 EIGIENLIQEHELILGNFQLPKISMHILPAGEESLTTKTQNFEANEQKVLNVGDPIMFEW 97
>AC024808-3|AAK29925.1| 183|Caenorhabditis elegans Hypothetical
protein Y53G8AM.6 protein.
Length = 183
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -1
Query: 615 NGHESDSSWVVAQSS*CMRILPS*FPQIWAHCMVVHGIHF--VYSYDELFDTEGESEQ 448
NGH SD + C+RIL S ++ H + +F + S+D+L E + E+
Sbjct: 40 NGHFSDLASFQVSIEVCVRILLSLVHNVFVHASYYNVFNFENLVSFDKLLPAEKDLEK 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,079
Number of Sequences: 27780
Number of extensions: 340722
Number of successful extensions: 1154
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -