Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060588.seq
         (380 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine re...    26   7.9  

>AF040649-3|AAK72087.1|  317|Caenorhabditis elegans Serpentine
           receptor, class i protein36 protein.
          Length = 317

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 245 ILSNXXVCS*VCYG*KXRKVXARIEHYSKGTHTA*SGPLIFILISF 108
           +L +  VC  +C+  K RK+       + GT+   +   IFI +S+
Sbjct: 100 LLISEIVCLTICFAWKHRKISKLANRLNDGTYNLLAVFAIFIALSY 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,060,252
Number of Sequences: 27780
Number of extensions: 59906
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)