Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060587.seq
         (684 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q182E0 Cluster: Putative uncharacterized protein; n=2; ...    38   0.23 
UniRef50_Q965R1 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q1FGN9 Cluster: Binding-protein-dependent transport sys...    34   3.7  
UniRef50_Q4UA59 Cluster: SfiI-subtelomeric related protein famil...    34   3.7  
UniRef50_Q23CM8 Cluster: Cyclic nucleotide-binding domain contai...    34   3.7  
UniRef50_A0C752 Cluster: Chromosome undetermined scaffold_154, w...    33   6.5  

>UniRef50_Q182E0 Cluster: Putative uncharacterized protein; n=2;
           Clostridium difficile|Rep: Putative uncharacterized
           protein - Clostridium difficile (strain 630)
          Length = 491

 Score = 37.9 bits (84), Expect = 0.23
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 264 RSEMYKTVLCFEKFFTTFFSRLYGNTNFGQIL---RELRQS*LLQYKLFCSYRLYTPKSF 94
           RS   ++ +CFE  F      LY N     +     +LR+   L +K+    ++Y+ KSF
Sbjct: 218 RSGQVESNICFECEFFNLMCLLYINLKRPMVFAYTNDLRELAFLNHKIMLKRKMYSDKSF 277

Query: 93  YSSCINRKISII 58
           Y   ++ KIS I
Sbjct: 278 YKKLLHEKISSI 289


>UniRef50_Q965R1 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 588

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
 Frame = +3

Query: 282 KLLFWLKSGGATK--SPLGQLVRKQT-DHRTINKKATTSVIEL*NRKDFGNIFKS--LRE 446
           K +FW++   +++  S   QL+     D+ T    ++ +++ +    D   + +   LRE
Sbjct: 443 KTIFWVRIDNSSEQDSRSKQLIEPMYFDNSTAKIISSRTILSI--EDDLRRMMRKPKLRE 500

Query: 447 LFIS*PKIHSEFVDLIYSCYRDQFPKKHQEIRI 545
           +F + P IH  F DLI  CY D++ + H   RI
Sbjct: 501 IFKNLPNIHY-FTDLIVKCYNDRYYRYHYSGRI 532


>UniRef50_Q1FGN9 Cluster: Binding-protein-dependent transport
           systems inner membrane component; n=1; Clostridium
           phytofermentans ISDg|Rep: Binding-protein-dependent
           transport systems inner membrane component - Clostridium
           phytofermentans ISDg
          Length = 197

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 284 F*TQFPIAAKCTKQSFVSKSFLQPFFRVYTETQILVKFCANCVKVNFYNTNFFVV 120
           F T +P     T Q +++ +FL+  ++    + +L       + VNFYNTNF  V
Sbjct: 140 FSTNYPPNHSYTLQYYMNNNFLKLDYQSLATSAVLTSVLVFVIVVNFYNTNFNTV 194


>UniRef50_Q4UA59 Cluster: SfiI-subtelomeric related protein family
           member, putative; n=1; Theileria annulata|Rep:
           SfiI-subtelomeric related protein family member,
           putative - Theileria annulata
          Length = 529

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 63  LKFYDLYN*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRI 200
           L F D  N + N+L+  V+ Y+ + ++E  F+  +  FD  LC+ +
Sbjct: 47  LLFTDSNNKDYNYLQCSVELYELILVIEFGFNCKKVWFDSKLCWTL 92


>UniRef50_Q23CM8 Cluster: Cyclic nucleotide-binding domain containing
            protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclic
            nucleotide-binding domain containing protein -
            Tetrahymena thermophila SB210
          Length = 913

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
 Frame = -3

Query: 301  LSQNSNFEHNFLSQRNVQNSPLFRKVFYNLFFASIRKHKFWSNS---ARTASKLTSTIQ- 134
            ++Q +NF+  + +Q+N++   +  +VF N +F  I++ +   +     +  SK+   IQ 
Sbjct: 777  ITQETNFQSFYPNQKNLEQFVIRSQVFENQYFERIQQKQLKYSPEIYEQKQSKILDFIQQ 836

Query: 133  ---TFL*LSTLYSKKFLF*LYKS*NFNNK----SQRQRPRKTHHTYIPSRA 2
                FL +      K     Y + NFNN      Q+Q+PR+T H+    RA
Sbjct: 837  FEWEFLEMQLFDKIKNFQYYYPTFNFNNVIKKIKQQQQPRRTIHSKRKIRA 887


>UniRef50_A0C752 Cluster: Chromosome undetermined scaffold_154,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_154,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 708

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 28/96 (29%), Positives = 43/96 (44%)
 Frame = +1

Query: 250 VHFAAIGNCVQNYCFGLNLEGQQNRLLAN*FGNKLITER*TKKQRPQ*LNYKIARILETS 429
           ++F  I NC+   CF L  EGQ N L++N  G   I ++  K +  Q     I  +   +
Sbjct: 66  LYFTFIKNCIFLLCFHLMAEGQFN-LISNYQGEDCIPKKRVKFETDQECVRDIVTMFSLA 124

Query: 430 SKVFVNFSSANLKFTVSSSTLYIRATGISFQRNIKK 537
           ++       A       SST  + A  I F++N KK
Sbjct: 125 NRRKDQELQALQDILTLSSTFLMMAFLIYFRKNQKK 160


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,039,785
Number of Sequences: 1657284
Number of extensions: 12532275
Number of successful extensions: 33127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33119
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)