Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060587.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   2.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.4  

>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -2

Query: 275 QFPIAAKCTKQSFVSKSFLQPFFRVYTETQILVKFCANCV 156
           QF +    T  +FVS  F  PF+       +LV+   + +
Sbjct: 348 QFEMTQNSTNINFVSTFFKIPFYSTLRPINLLVQIILDVI 387


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = -1

Query: 279 NTISYRSEMYKTVLCFEKFFTTFFSRLYG----NTNFGQILRELRQS*LLQYKLFCSYRL 112
           N  S R++  +T   F  F+  F  + Y     N    + L E  ++ L    + CS   
Sbjct: 19  NVSSTRTKYLRTN--FPNFYNDFEVQRYTWKCENQKCVKYLVEDEETSLATCNMLCSEPA 76

Query: 111 YTPKSFYSSCINRKISIINRS 49
             PK  +    NR+ SII+++
Sbjct: 77  IWPKPVHIKLTNRESSIIDKT 97


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/23 (30%), Positives = 17/23 (73%)
 Frame = -3

Query: 304 DLSQNSNFEHNFLSQRNVQNSPL 236
           +  +N++F   FLS++N+Q++ +
Sbjct: 417 ETKRNADFLATFLSEQNIQSTSI 439


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 249 CTFRCDRKLCSKLLFWLKSGGATKSPLG 332
           C   CD+  C K LF +K   A +   G
Sbjct: 885 CWRECDKATCEK-LFRMKKSSALRPASG 911


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 346 FRTSWPRGDFVAPPDLSQNSNFEHNFLSQRNVQNS 242
           F  ++    F+A  D  +N N EHN+     + +S
Sbjct: 15  FYQNYKTNPFLAS-DCDKNQNTEHNYTHNNEMYHS 48


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 316 VAPPDLSQNSNFEHNFLSQRNVQNSPLFRKV 224
           VAP   + NS+ + NFLS      +P + ++
Sbjct: 493 VAPTGENSNSSSDFNFLSNLANDYTPEYYQI 523


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 316 VAPPDLSQNSNFEHNFLSQRNVQNSPLFRKV 224
           VAP   + NS+ + NFLS      +P + ++
Sbjct: 441 VAPTGENSNSSSDFNFLSNLANDYTPEYYQI 471


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,349
Number of Sequences: 336
Number of extensions: 3515
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)