Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060587.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0241 - 15757331-15757423,15757536-15757643,15758487-157587...    30   2.0  
04_03_0870 + 20431215-20431419,20432559-20433439,20433829-204339...    29   3.4  
11_08_0003 + 27492503-27492812,27492863-27493148,27495399-274956...    28   6.0  

>03_03_0241 -
           15757331-15757423,15757536-15757643,15758487-15758710,
           15759543-15760110
          Length = 330

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 334 WPRGDFVAPPDLSQNSNFEHNFLSQRNVQNSPLFRKVFYNLFFA 203
           W  G  +A P+ S   +    +L++    N+P F   +YN++FA
Sbjct: 210 WFGGQGIAVPEPSTAGSTYATYLTELAESNAPAFLSHYYNIYFA 253


>04_03_0870 +
           20431215-20431419,20432559-20433439,20433829-20433990,
           20434742-20435001,20435110-20435200,20435487-20435675
          Length = 595

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 322 DFVAPPDLSQNSNFEHNFLSQRNVQNSPLFRKVFYNLFFASIRKHKFWSN 173
           D V P  +       ++F   +N  N+P++ K +Y+LF+    K   W N
Sbjct: 43  DGVPPSIVDSELRTGYHFQPPKNWINAPMYYKGWYHLFYQYNPKGAVWGN 92


>11_08_0003 +
           27492503-27492812,27492863-27493148,27495399-27495652,
           27496645-27496830,27497042-27498117
          Length = 703

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +3

Query: 240 GLFCTFRCDRKLCSKLLFWLKSGGATKSPLGQLVRKQTDHRTINKKATTSVIEL*NRKDF 419
           GL    RC+ K   +  F+  +GG     +G     Q    TI  K  T +     +  F
Sbjct: 356 GLAWFIRCEHKAWEQRGFFESNGGQLLKDMGVTTFTQEQLDTITNKKRTKI----GKGTF 411

Query: 420 GNIFKSLRE 446
           G ++K L +
Sbjct: 412 GEVYKGLHD 420


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,009,230
Number of Sequences: 37544
Number of extensions: 318001
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)