Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060587.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)        29   2.7  
SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)       29   2.7  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               29   4.6  
SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  

>SB_57119| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.4e-20)
          Length = 1423

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 339  VRKQTDHRTINKKATTSVIEL*NRKDFGNIFKSLRELFIS*PKIHSEFVDLIYSCYRDQF 518
            +R+Q   R + KK   S + + N     ++FK+L EL  +  K+++E  +      R++ 
Sbjct: 1108 LRRQILGRAVCKKVPVSAVGIFNYDGAQDLFKNLMELTENGRKVYAERWNAAQEALREEL 1167

Query: 519  PKKHQEI 539
              +H  I
Sbjct: 1168 DNEHPVI 1174


>SB_17182| Best HMM Match : Phospholip_A2_1 (HMM E-Value=5.8e-13)
          Length = 182

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 264 DRKLCSKLLFWLKSGGATKSP 326
           D  LC ++ FWLK+G  TK+P
Sbjct: 120 DTSLCFRVRFWLKAGIRTKAP 140


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/67 (22%), Positives = 30/67 (44%)
 Frame = +3

Query: 84   N*NKNFLEYKVDNYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRNKGLFCTFRC 263
            N  +N  + +VD Y++ C  +        + + N+C  +D +KR  K   N+  +     
Sbjct: 1398 NTKENNEDRRVDEYRRKCKSKPGTTKENLDVNANICKNLDKRKRSYKEAMNESAYLEGNV 1457

Query: 264  DRKLCSK 284
              +L S+
Sbjct: 1458 KERLSSE 1464


>SB_2985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 311 GNKIASWPTSSETN*SPNDKQKSNDLS 391
           GN++A W T + TN S N+   SN+ S
Sbjct: 5   GNEVAFWGTQNSTNNSNNNDNSSNNNS 31


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,635,618
Number of Sequences: 59808
Number of extensions: 413055
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)