Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060587.seq
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical ...    36   0.036
Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AY314779-1|AAQ84886.1|  454|Caenorhabditis elegans secretin rece...    28   5.4  
AL031620-2|CAA20927.2|  454|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical ...    28   5.4  
Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC024881-9|AAK71410.1|  588|Caenorhabditis elegans Hypothetical
           protein Y97E10B.1 protein.
          Length = 588

 Score = 35.5 bits (78), Expect = 0.036
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
 Frame = +3

Query: 282 KLLFWLKSGGATK--SPLGQLVRKQT-DHRTINKKATTSVIEL*NRKDFGNIFKS--LRE 446
           K +FW++   +++  S   QL+     D+ T    ++ +++ +    D   + +   LRE
Sbjct: 443 KTIFWVRIDNSSEQDSRSKQLIEPMYFDNSTAKIISSRTILSI--EDDLRRMMRKPKLRE 500

Query: 447 LFIS*PKIHSEFVDLIYSCYRDQFPKKHQEIRI 545
           +F + P IH  F DLI  CY D++ + H   RI
Sbjct: 501 IFKNLPNIHY-FTDLIVKCYNDRYYRYHYSGRI 532


>Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical
           protein F49C12.5b protein.
          Length = 480

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 435 SLRELFIS*PKIHSEFVDLIYSCYRDQFPKKHQEIRI 545
           +++++F   P IH  + DL+ +CY D++ K H   RI
Sbjct: 389 NIQKIFAQLPDIHY-YTDLVVNCYNDRYYKYHYSGRI 424


>Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical
           protein F49C12.5a protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 435 SLRELFIS*PKIHSEFVDLIYSCYRDQFPKKHQEIRI 545
           +++++F   P IH  + DL+ +CY D++ K H   RI
Sbjct: 416 NIQKIFAQLPDIHY-YTDLVVNCYNDRYYKYHYSGRI 451


>U97007-3|AAB52299.1|  374|Caenorhabditis elegans Hypothetical
           protein ZC196.9 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 479 VRRPYIFVLQGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQSALHDFGDLFLK 643
           V+R ++F L+    +        IWI     FA+ +  A+M  +  + FG+L  K
Sbjct: 168 VQRAFVFFLRNLTDRFFESKVIYIWISSIYIFAFGVEYALMFSNCQYRFGELARK 222


>AY314779-1|AAQ84886.1|  454|Caenorhabditis elegans secretin
           receptor-like proteinSEB-3 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 450 KVHEDF*RCFQNPCDFIVQLLRSLLFCLSFGDQFVSELVGQEAILL 313
           KV E++ +C Q  C     +LR L+  +S    FVS ++   AI+L
Sbjct: 91  KVVEEYAQCLQGFCRVCPDVLRDLVISVSLTLSFVSVILLVAAIVL 136


>AL031620-2|CAA20927.2|  454|Caenorhabditis elegans Hypothetical
           protein C18B12.2 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 450 KVHEDF*RCFQNPCDFIVQLLRSLLFCLSFGDQFVSELVGQEAILL 313
           KV E++ +C Q  C     +LR L+  +S    FVS ++   AI+L
Sbjct: 91  KVVEEYAQCLQGFCRVCPDVLRDLVISVSLTLSFVSVILLVAAIVL 136


>AF036699-1|AAB88362.1|  331|Caenorhabditis elegans Hypothetical
           protein F58F6.6 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 479 VRRPYIFVLQGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQSALHDFGDLFLK 643
           V+R ++F L+    +        IWI     FA+ +  A+M  +  + FG+L  K
Sbjct: 125 VQRAFVFFLRNLTDRFFESKVIYIWISSIYIFAFGVEYALMSSNCQYRFGELARK 179


>Z68012-1|CAA92016.1|  304|Caenorhabditis elegans Hypothetical
           protein T24D5.1 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 368 KQKSNDLSN*TIKSQGFWKHLQKSS*TFHQLT*NSQ*VRRPYIFVLQGSVSKETSRNKN 544
           +Q   DL N  + +Q     LQ    TF     N Q  R  Y F+ Q     +T RN+N
Sbjct: 17  QQNFEDLDNSVLSAQS----LQSVVGTFSTKYRNGQKARGSYYFIFQNLAISKTKRNQN 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,859,449
Number of Sequences: 27780
Number of extensions: 329832
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)