Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060587.seq
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.6  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   6.3  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   6.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.3  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   6.3  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   6.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.3  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -3

Query: 292 NSNFEHNFLSQRNVQNSPLFRKVFYNL 212
           N+N+ +N+ +  N  N   ++K++YN+
Sbjct: 331 NNNYNNNYNNYNN-NNYNNYKKLYYNI 356


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 92  YNYNNNYNNYNKHNYNKL 109


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 539 YFLMFLWKLIPVARIYKVDE 480
           Y++M LW  I     YK+D+
Sbjct: 276 YYVMSLWYWIDRNSAYKIDQ 295


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 325 YNYNNNYNNYNKHNYNKL 342


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKKV 134
           YN N N+  Y   NY K+
Sbjct: 325 YNYNNNYNNYNKHNYNKL 342


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 370 TKKQRPQ*LNYKIARILETSSKVFVNFSSANLKFTVSSST 489
           +KK R +    +IAR ++ +SK+F    S  +K TV  +T
Sbjct: 437 SKKPRRKFHFKQIARAVKFTSKLFGRALSRRIKATVLFAT 476


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 81  YN*NKNFLEYKVDNYKK 131
           YN N N  +Y  +NY K
Sbjct: 322 YNYNNNNYKYNYNNYNK 338


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +3

Query: 120 NYKKVCIVEVNFDAVRAEFDQNLCFRIDAKKRL*KTFRN 236
           NY K C  E         F+  L F  DA       FR+
Sbjct: 449 NYTKFCSTEKRLTKQNTAFENQLQFVSDAVMAFAYAFRD 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,419
Number of Sequences: 438
Number of extensions: 3936
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)