Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060587.seq
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31980.1 68417.m04547 expressed protein contains Pfam profile...    33   0.23 
At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    29   3.8  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    27   8.8  

>At4g31980.1 68417.m04547 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 680

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 372 KKATTSVIEL*NRKDFGNIFKSLRELFIS*PKIHSEFVDLIYSCYRDQFPKKHQEIRIKS 551
           ++ T S+I+L  R     + +   E FI+ P+    FVDL+ SCY  QFP K +   +K 
Sbjct: 446 QQGTPSIIQLAQRHFSYFLSRIDDEKFITEPE---HFVDLLRSCYLPQFPIKLEYTTVKV 502

Query: 552 GLSVEFV-LHT 581
             + E   LHT
Sbjct: 503 DNAPEATELHT 513


>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
            [Arabidopsis thaliana] GI:6491702; similar to myosin
            GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
            profiles: PF00063: myosin head (motor domain), PF00612:
            IQ calmodulin-binding motif; identical to cDNA myosin
            (ATM) GI:297068
          Length = 1166

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 276  CSKLLFWLKSGGATKSPLGQLVRKQTDHRTINKKATTSVIEL*NRKDFGNIFK 434
            CS  + WLKSGGA  + LG+++ K +    + ++   +   L  +++  +I +
Sbjct: 930  CSGDIGWLKSGGAKTNELGEVLVKASVLSELQRRVLKAEAALREKEEENDILQ 982


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
            KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 500  RIYKVDELTVNFRLADEKFTKTFEDVSKILA 408
            R+ +  + T +F+LAD  +TK  E+  K+L+
Sbjct: 1947 RVPQTTKDTASFKLADTDYTKRLENAQKLLS 1977


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,601,836
Number of Sequences: 28952
Number of extensions: 292238
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)