Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060586.seq
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 115 6e-27
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 115 7e-27
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 31 0.15
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 4.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 4.4
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 25 7.7
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 25 7.7
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 7.7
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 115 bits (277), Expect = 6e-27
Identities = 48/84 (57%), Positives = 68/84 (80%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
KVH+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D++
Sbjct: 57 KVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVR 115
Query: 436 IPDGDLGTQLRTDFDSGKELLCTV 507
+P+G+LG ++ FD G++L+ TV
Sbjct: 116 LPEGELGNEIEEGFDEGRDLIITV 139
Score = 95.9 bits (228), Expect = 5e-21
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +2
Query: 89 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVK 259
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGH K
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAK 57
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 115 bits (276), Expect = 7e-27
Identities = 48/84 (57%), Positives = 68/84 (80%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
KVH+V +DIFNG+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D++
Sbjct: 57 KVHIVALDIFNGRKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVR 115
Query: 436 IPDGDLGTQLRTDFDSGKELLCTV 507
+P+G+LG ++ F+ GK+L+ TV
Sbjct: 116 LPEGELGNEIEEGFEEGKDLIITV 139
Score = 95.9 bits (228), Expect = 5e-21
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = +2
Query: 89 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVK 259
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGH K
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAK 57
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 31.1 bits (67), Expect = 0.15
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 229 IQNRKARPR-KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYL 393
++N K RP+ ++ L G I K ++ NM +P+++ E Q+ D + D YL
Sbjct: 940 MENGKRRPKYRIRLSGNPILGDGKSDN-----QNMSIPYIRGEYVQMIDANQDNYL 990
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 285 EDINPNQVNFTWPCFPVLDVDISTILHGRPFSITKP 178
+ +NP PC+P D D S++++ P S P
Sbjct: 109 KSMNPPPEQLDSPCYPHFDQDSSSVIYPSPPSTYYP 144
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -3
Query: 424 HAGHRCQPSGSGSHHPRYQSVGSLRASRGVRP 329
H G P+ PR + GS A+RG RP
Sbjct: 957 HVGTGLPPTSKSKPFPRLATGGSTAAARGPRP 988
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 457 TQLRTDFDSGKELLCTVRNPAVRSASSPSK 546
TQ+RT FD K L + RN +S S K
Sbjct: 91 TQMRTKFDKTKSWLSSKRNTLNKSKESLQK 120
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 451 LGTQLRTDFDSGKELLCTVRNPAVRSASSPSKQTQLSDK 567
LG +L +DF+ L V NPA S + K+ +L ++
Sbjct: 144 LGDELDSDFEDDNTLEIEVENPADVSKDAEIKKLKLQNQ 182
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 343 VKREDYQLTDISDDGYL 393
+KREDY+LT ++ GYL
Sbjct: 91 IKREDYELTLCANCGYL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,687
Number of Sequences: 5004
Number of extensions: 60761
Number of successful extensions: 202
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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