Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060586.seq
(681 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 106 1e-23
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 106 1e-23
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 105 2e-23
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 103 2e-22
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 1e-07
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.28
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 32 0.48
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.1
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 31 1.1
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690... 29 2.6
02_05_0070 - 25584690-25584806,25585151-25585312,25585396-255854... 29 2.6
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 29 2.6
05_01_0297 - 2314687-2316021 29 3.4
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 29 3.4
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 4.5
01_07_0321 + 42715969-42716233,42716320-42716399,42716545-427166... 28 6.0
07_01_1128 - 10458441-10458524,10458898-10458965,10462736-104628... 28 7.9
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 106 bits (255), Expect = 1e-23
Identities = 47/85 (55%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
K H V IDIFNGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL+
Sbjct: 75 KCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLR 134
Query: 436 IP-DGDLGTQLRTDFDSGKELLCTV 507
+P D L Q++T F GK+L+ TV
Sbjct: 135 LPTDDSLLGQIKTGFGEGKDLVVTV 159
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC----KIVEMSTSKTGKHGH 253
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPC K+VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 254 VKFTWLGLISSMVKSMKISVP 316
K ++ + K ++ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 106 bits (255), Expect = 1e-23
Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
K H V IDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL+
Sbjct: 1393 KCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLR 1452
Query: 436 IP-DGDLGTQLRTDFDSGKELLCTV 507
+P D L TQ++ F GK+L+ TV
Sbjct: 1453 LPSDEALLTQIKDGFAEGKDLIVTV 1477
Score = 70.1 bits (164), Expect = 1e-12
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 14/90 (15%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPC-------------KIVEMS 226
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPC K+VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 227 TSKTGKHGHVKFTWLGLISSMVKSMKISVP 316
TSKTGKHGH K ++ + K ++ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 105 bits (253), Expect = 2e-23
Identities = 47/86 (54%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
K H VGIDIFNGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL+
Sbjct: 58 KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLR 117
Query: 436 IP-DGDLGTQLRTDF-DSGKELLCTV 507
+P D L Q++ F + GK+++ TV
Sbjct: 118 LPTDDTLTNQIKNGFGEEGKDMILTV 143
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKFT 265
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGH K
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 266 WLGLISSMVKSMKISVP 316
++G+ K ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 103 bits (246), Expect = 2e-22
Identities = 45/85 (52%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
K H V IDIF KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL+
Sbjct: 90 KCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLR 149
Query: 436 IP-DGDLGTQLRTDFDSGKELLCTV 507
+P D +L +Q++ F GK+L+ TV
Sbjct: 150 LPTDDNLLSQIKDGFGEGKDLVVTV 174
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 89 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHV 256
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK + GHV
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKDQILVRFTNFGQGHV 57
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +2
Query: 209 KIVEMSTSKTGKHGHVKFTWLGLISSMVKSMKISVP 316
K+VE+STSKTGKHGH K ++ + K ++ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/67 (40%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Frame = +1
Query: 340 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVRN 513
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV +
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 514 PAVRSAS 534
RS S
Sbjct: 106 AMGRSRS 112
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 129 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 242
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 31.9 bits (69), Expect = 0.48
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Frame = +1
Query: 304 DICPSTHNMD---VPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 474
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 475 FDSGKELLCTVRNPAVRSASSPSKQTQLSDK*TNSAFYRGN 597
SGKE + NP + + S + + + FY G+
Sbjct: 293 AASGKESMPMGMNPNFDTMGADSDLAVVLNAWYAAGFYTGS 333
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 331 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 450
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 90 WVTSKTHTSRPETPGPQPPSPCNV 161
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>03_06_0517 +
34466743-34466879,34468478-34468588,34468997-34469079,
34469287-34469404,34469503-34469714,34470167-34470651,
34470731-34470801,34470898-34470955,34471161-34471192,
34471193-34471449,34471820-34471974,34472353-34472636,
34472725-34472842,34473574-34473756,34473848-34474162
Length = 872
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Frame = +1
Query: 346 KREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGK--ELLCTVRNPA 519
K + L S DGYL L+ + + + I + L + D G +L+ T N
Sbjct: 634 KSKGLTLATTSFDGYLYLIEGSSGCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGN 693
Query: 520 VRSASSPS-----KQTQLSDK*TNSAFYRGNK 600
V S+PS K+ + S++ N+A YR N+
Sbjct: 694 VFCFSTPSPHHPLKEWRSSNQGRNNAAYRYNR 725
>02_05_0070 -
25584690-25584806,25585151-25585312,25585396-25585491,
25585894-25585955,25586035-25586110,25586195-25586277,
25586456-25586778,25586882-25586928,25587014-25587150,
25587250-25587322,25588159-25588251,25588543-25588632,
25588684-25588786,25588869-25588981,25589181-25589778,
25589888-25590065,25590277-25590296,25590713-25590882,
25591245-25591485,25592997-25593199
Length = 994
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 461 SCVLTSTAARNCCAPCEILR*GVRHRRQSKHSSRTNKPTQHFIGVTNF 604
SC + N C + R GV H Q S KP H+ V++F
Sbjct: 717 SCKHCVSGKSNMCQKLGLERRGVMHSDQKTRFSLRGKPVYHYCAVSSF 764
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 74 IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 226
+Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 431 VQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>05_01_0297 - 2314687-2316021
Length = 444
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = +1
Query: 364 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVRNPAVRSASSPS 543
+ D + +G L + AD D+R + DGD G +LR F S +LL V SP
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGGGVLGSPL 149
Query: 544 KQTQLS 561
Q++
Sbjct: 150 LLVQVT 155
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 478 RSQYATVCRGHHPEF*GPHAGHRCQPSGSGSHHPRYQSVGSLRASRGVRPCC 323
+++YA+ HHPE H + S H R+ S G + ASR + C
Sbjct: 150 KNEYASKAEVHHPEILVDHDVYLPPSPSSHDSHERFCSGGVVLASRDGKIVC 201
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +3
Query: 105 THTSRPETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 233
T PE P PP C + P C C ++ +LL+ HP
Sbjct: 3 TAKQAPENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>01_07_0321 +
42715969-42716233,42716320-42716399,42716545-42716613,
42716710-42716791,42716902-42716996,42717129-42717203,
42717385-42717436,42717442-42717630,42717667-42717752,
42717827-42717902,42718001-42718164,42718307-42718426
Length = 450
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 2 GTRFYCEALINSYLFDFIIPDRC*IQNTTMGD 97
GT FY +AL++ +LFD + D I+ T+ D
Sbjct: 132 GTNFYIQALVSPFLFDDMAQD---IEGLTLND 160
>07_01_1128 -
10458441-10458524,10458898-10458965,10462736-10462864,
10462938-10463051,10463114-10463303,10463378-10463560
Length = 255
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 480 QRQGIVVHRAKSCGEECVIAVKANTALGQINQLSI 584
Q QGIV++R K E C++ N A+ +N++ +
Sbjct: 31 QPQGIVINRQKEDEEVCLLKKALNQAIRIVNRIHL 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,731,046
Number of Sequences: 37544
Number of extensions: 435419
Number of successful extensions: 1606
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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