Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060586.seq
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                97   1e-20
SB_39908| Best HMM Match : Prismane (HMM E-Value=3)                    34   0.12 
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               31   1.1  
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           30   1.5  
SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)                        29   3.5  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     29   3.5  
SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_46133| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_37371| Best HMM Match : NHL (HMM E-Value=0.79)                      29   4.6  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   8.0  
SB_33753| Best HMM Match : bZIP_Maf (HMM E-Value=2.3)                  28   8.0  
SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                28   8.0  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   8.0  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/61 (68%), Positives = 50/61 (81%)
 Frame = +2

Query: 83  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKF 262
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGH K 
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644

Query: 263 T 265
           T
Sbjct: 645 T 645



 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 21/49 (42%), Positives = 34/49 (69%)
 Frame = +1

Query: 361 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTV 507
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TV
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTV 691


>SB_39908| Best HMM Match : Prismane (HMM E-Value=3)
          Length = 456

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 513 SCGEECVIAVKANTALGQINQLSIL 587
           +CGE C++A KA+ A GQ+N   +L
Sbjct: 217 ACGEHCILATKADDATGQLNSFFLL 241


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 96  TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 230
           T+K HT++P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 72  KFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 170
           K KT +  T+K +T++P T  P+   P   +PC
Sbjct: 100 KPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 84  QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 239
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -3

Query: 481 CRS-QYATVCRGHHPEF*GPHAGHRCQPSGSGSHHPRYQSV-GSLRASRGVRPC 326
           CRS Q  TV   HH         HRC+   SG+H  R+ ++   L      RPC
Sbjct: 241 CRSLQVQTVINAHHTVRNVCDICHRCRKGCSGNHDNRFGAIQARLLGGLAPRPC 294


>SB_9976| Best HMM Match : PIP5K (HMM E-Value=2)
          Length = 673

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 542 DGDDALLTAGFRTVHNNSLPLSKSVRNCVPRSPSGILRSSR 420
           DGD+   T   R V    L L+     C  +SP GI RS +
Sbjct: 17  DGDEECATRRIRQVTVGDLTLTSDSEECNLKSPFGICRSQK 57


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 118 LEVCVFDVTHCCVLNLTTVRNDKIKKITIY 29
           + + +F VT+CC L LT +   + +++TIY
Sbjct: 14  VNLIIFTVTNCCFLVLTALIGFRDRQVTIY 43


>SB_54303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 696

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 542 DGDDALLTAGFRTVHNNSLPLSKSVRNCVPRSPSGILRSSR 420
           DGD+   T   R V    L L+     C  +SP GI RS +
Sbjct: 39  DGDEECATRRIRQVTVGDLTLTSDSEECNLKSPFGICRSHK 79


>SB_46133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -2

Query: 335 TSMLCVEGQISSYFLPLKISIPTK------*TLRGRAFRFWMWTFQQSCMDDPSA*RNRF 174
           + M CV   IS+   P+ + +PTK       T+ G+  + W+W       D P +  N F
Sbjct: 151 SKMSCVRKSISTLTDPMDLKVPTKYTEHGMATIDGQTCQSWLWKSGGHTSDQPISTEN-F 209

Query: 173 Y 171
           Y
Sbjct: 210 Y 210


>SB_37371| Best HMM Match : NHL (HMM E-Value=0.79)
          Length = 312

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 542 DGDDALLTAGFRTVHNNSLPLSKSVRNCVPRSPSGILRSSR 420
           DGD+   T   R V    L L+     C  +SP GI RS +
Sbjct: 81  DGDEECATRRIRQVTVGDLTLTSDSEECNLKSPFGICRSHK 121


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +1

Query: 286 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 414
           NG  Y   CP   N D    + EDY  +   D  YLT   D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 542  DGDDALLTAGFRTVHNNSLPLSKSVRNCVPRSPSGILRSSR 420
            DGD+   T   R V    L L+     C  +SP GI RS +
Sbjct: 949  DGDEECATRRIRQVTVGDLTLTSDSEECNLKSPFGICRSHK 989


>SB_34466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 566 LSESCVCFDGDDALLTAGFRTVHNNSLPLSKSVRNCVPRSPSGIL 432
           + ++C    GD  LLTAG     + ++ ++  + N V ++P GIL
Sbjct: 343 IRDACFSCQGDGLLLTAGM----DKTIQITSMLSNTVVQTPGGIL 383


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
 Frame = -3

Query: 562 PRAVFALTAMTHSS--PQDFARCTTIPCRCRSQYATV-CRGHHPEF*GPHA---GHRCQP 401
           P  + +LTA +HSS       R   IP   R   +++   G +P      A         
Sbjct: 456 PYDISSLTAASHSSLTGSRLERGLEIPSAVRPDISSMYTHGMYPTVPTSSALLNASAVPV 515

Query: 400 SGSGSHHPRYQSVGSLRASRGVRPC-CVWRDRYL 302
            G+GS HP Y +V        V PC C W+ + L
Sbjct: 516 PGAGSPHPHYHAVQGANGQYSV-PCNCTWQPQDL 548


>SB_54008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1940

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 512  FRTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPL 408
            +RT  + S PL+   R+  PRSP  ++    RSP+
Sbjct: 1684 YRTPSDRSSPLTVGGRSSRPRSPPRLMEPRPRSPV 1718


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 99  SKTHTSRPETPGPQPPSPCNV 161
           ++T T++PET  P+PP+P  +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185


>SB_33753| Best HMM Match : bZIP_Maf (HMM E-Value=2.3)
          Length = 223

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
 Frame = +1

Query: 343 VKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVRNP 516
           ++R+  +L D+  S      L  +NG LRE+L++   D+  Q+R + DS K ++  +   
Sbjct: 5   LERDVLELKDLYKSFQSAQRLKEENGYLREELRLIKSDM-DQIREERDSLKLVVSMLTKD 63

Query: 517 AVRS--ASSPSKQTQLSD 564
             ++   + PS Q Q+ D
Sbjct: 64  LYKNHPDNKPSSQDQVLD 81


>SB_50787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 340 GVRPCCVWRDRYLHTFYH*RYQSQPSELYVAVLSGFGCGHFNNLAWTTLQHNETVFTQ 167
           G+R C    D  L  F +    S+  ++  A ++ +G GH N +    L H   + TQ
Sbjct: 243 GLRSCITHGDDLLSVFDNMESSSKVFDMSNAPVTRYGLGHVNQILEEELSHLRFLKTQ 300


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 551  VCFDGDDALLTAGFRTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRV 393
            V F       T   R+  N S   S    + V +SPS ILRS ++ P  A R+
Sbjct: 1490 VVFGSTSGKNTESRRSTPNTSFDSSFDDEDDVFQSPSDILRSRKKRPKMATRI 1542


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 93  VTSKTHTSRPETPGPQPPSPCNVRP 167
           VT K  T +P TP P  P P   RP
Sbjct: 768 VTPKPVTPKPVTPKPVTPKPVTTRP 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,074,239
Number of Sequences: 59808
Number of extensions: 508563
Number of successful extensions: 1610
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)