Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060586.seq
(681 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 25 0.67
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 25 0.67
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 23 2.7
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 2.7
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.7
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 22 4.7
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 22 4.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 6.2
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.67
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 177 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 82
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 25.0 bits (52), Expect = 0.67
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -1
Query: 177 FLRRAEHCMGKVAEAPESPVSKCVSSMSPIVV 82
+LRR C + EAP PV + + S++P+V+
Sbjct: 47 YLRRQLKCA--LGEAPCDPVGRRLKSLAPLVL 76
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 23.0 bits (47), Expect = 2.7
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +3
Query: 96 TSKTHTSRPETPGPQ 140
T H PETPGPQ
Sbjct: 462 TPHHHPHPPETPGPQ 476
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 2.7
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 277 DIFNGKKYEDIC 312
D+ N +KYED+C
Sbjct: 597 DLSNERKYEDVC 608
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 243 FPVLDVDISTILHGR 199
FPVL V I+ +LHG+
Sbjct: 8 FPVLFVIINVLLHGQ 22
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 22.2 bits (45), Expect = 4.7
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = -3
Query: 610 NXKVCYPYKMLSWFICPRAVFALTAMTHSSPQDFARCTTIPCRCRSQYAT 461
N K + Y + +C A+F A P+ F RC S++ T
Sbjct: 4 NTKQAFIYSLA--LLCLHAIFVNAAPDWVPPEVFDLVAEDKARCMSEHGT 51
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 22.2 bits (45), Expect = 4.7
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = -3
Query: 610 NXKVCYPYKMLSWFICPRAVFALTAMTHSSPQDFARCTTIPCRCRSQYAT 461
N K + Y + +C A+F A P+ F RC S++ T
Sbjct: 4 NTKQAFIYSLA--LLCLHAIFVNAAPDWVPPEVFDLVAEDKARCMSEHGT 51
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 494 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 396
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,960
Number of Sequences: 438
Number of extensions: 4893
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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