Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060586.seq
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13950.1 68414.m01639 eukaryotic translation initiation facto... 109 1e-24
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 106 1e-23
At1g26630.1 68414.m03243 eukaryotic translation initiation facto... 104 6e-23
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 29 2.8
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 29 3.8
At5g41460.1 68418.m05035 fringe-related protein strong similarit... 28 6.6
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro... 28 6.6
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 28 6.6
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 27 8.7
At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative simila... 27 8.7
At1g20860.1 68414.m02613 phosphate transporter family protein si... 27 8.7
>At1g13950.1 68414.m01639 eukaryotic translation initiation factor
5A-1 / eIF-5A 1 identical to SP|Q9XI91 Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Arabidopsis thaliana}
Length = 158
Score = 109 bits (263), Expect = 1e-24
Identities = 49/85 (57%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
K H V IDIF KK EDI PS+HN DVPHV R DYQL DIS+DGY++L+ DNG ++DLK
Sbjct: 56 KCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLK 115
Query: 436 IPDGD-LGTQLRTDFDSGKELLCTV 507
+P+ D L Q+++ FD GK+L+ +V
Sbjct: 116 LPNDDTLLQQIKSGFDDGKDLVVSV 140
Score = 87.4 bits (207), Expect = 8e-18
Identities = 36/72 (50%), Positives = 52/72 (72%)
Frame = +2
Query: 101 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKFTWLGLI 280
E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGH K ++ +
Sbjct: 4 EEHHFESSDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 281 SSMVKSMKISVP 316
K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 106 bits (255), Expect = 1e-23
Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
K H V IDIF KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ DNG ++DLK
Sbjct: 56 KCHFVAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLK 115
Query: 436 IP-DGDLGTQLRTDFDSGKELLCTV 507
+P D L TQL+ F+ GK+++ +V
Sbjct: 116 LPTDEALLTQLKNGFEEGKDIVVSV 140
Score = 83.8 bits (198), Expect = 9e-17
Identities = 35/72 (48%), Positives = 51/72 (70%)
Frame = +2
Query: 101 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKFTWLGLI 280
++ HFE+ D+GAS T+P Q +RK G +++KGRPCK+VE+STSKTGKHGH K ++ +
Sbjct: 4 DEHHFESSDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 281 SSMVKSMKISVP 316
K ++ VP
Sbjct: 64 IFTSKKLEDIVP 75
>At1g26630.1 68414.m03243 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similariy to
SP|Q9AXQ6 Eukaryotic translation initiation factor 5A-1
(eIF-5A 1) {Lycopersicon esculentum}
Length = 159
Score = 104 bits (249), Expect = 6e-23
Identities = 46/85 (54%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 KVHLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLK 435
K H V IDIF KK EDI PS+HN DVPHV R DYQL DI++DG+++L+ D+G ++DLK
Sbjct: 56 KCHFVAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLK 115
Query: 436 IP-DGDLGTQLRTDFDSGKELLCTV 507
+P D L Q+R FD GK+++ +V
Sbjct: 116 LPTDDGLTAQMRLGFDEGKDIVVSV 140
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/72 (45%), Positives = 48/72 (66%)
Frame = +2
Query: 101 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHVKFTWLGLI 280
++ HFE +SGAS T+P +RK G +++K RPCK+VE+STSKTGKHGH K ++ +
Sbjct: 4 DEHHFEASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAID 63
Query: 281 SSMVKSMKISVP 316
K ++ VP
Sbjct: 64 IFTAKKLEDIVP 75
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 244 ARPRKVHLVGIDIFNG-KKYEDICPSTHNMDVPHVKR 351
A+PR +H + + FNG KK++ P+ H + + H +R
Sbjct: 37 AKPRNLHGLSLS-FNGHKKFQTFEPTLHGISISHKER 72
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 201 RPFSITKPFLRRAEHCMGKVAEAPESPVSKCVSSMS 94
+P +T+P +R + A+ PE P++K SSMS
Sbjct: 631 QPDPVTRPTMRSVVQILVGEADVPEVPIAKPSSSMS 666
>At5g41460.1 68418.m05035 fringe-related protein strong similarity
to unknown protein (pir||T13026) similarity to predicted
proteins + similar to hypothetical protein GB:AAC23643
[Arabidopsis thaliana] + weak similarity to Fringe
[Schistocerca gregaria](GI:6573138);Fringe encodes an
extracellular protein that regulates Notch signalling.
Length = 524
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 75 FKTQQWVTSKTHTSRPETPGPQPPSP 152
F T Q K++ S P +P P PP P
Sbjct: 83 FHTNQTAVIKSYASPPPSPPPPPPPP 108
>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
protein similar to mavicyanin SP:P80728 from [Cucurbita
pepo]
Length = 310
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/18 (72%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = +3
Query: 99 SKTHT-SRPETPGPQPPS 149
SKTH SRP TP P PPS
Sbjct: 127 SKTHERSRPITPSPPPPS 144
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Frame = +3
Query: 102 KTHTSRPETPGPQPPS---PCNVRPCVKTVSLC*RVVHARLLKCP 227
KT T P PP PCN PC S + + R CP
Sbjct: 22 KTTTKPTAAAAPSPPDIHCPCNAGPCNTVTSKTEKNPNRRFYTCP 66
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 343 VKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDL-GTQLRTDFDSGKE 492
V+R+ +++ Y L ADN + + G + GT+++T+FDS +E
Sbjct: 350 VRRDGSKMSLAQSKKYSQLNADNAQWEDRQLLRSGAVRGTEVQTEFDSEEE 400
>At3g46960.1 68416.m05099 DEAD/DEAH box helicase, putative similar to
SP|P35207 Antiviral protein SKI2 {Saccharomyces
cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 1347
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Frame = +1
Query: 373 ISDDGYLTLMADNG--DLREDLKIPDGDLGTQLR----TDFDSGKELLCTV 507
+SD+ L + A G D+ +++ D DL Q++ + +SG+EL+CTV
Sbjct: 1141 MSDEALLQMPAFQGRIDVLKNIGCIDDDLVVQIKGRVACEMNSGEELICTV 1191
>At1g20860.1 68414.m02613 phosphate transporter family protein
similar to phosphate transporter [Catharanthus roseus]
GI:2208908, inorganic phosphate transporter 1 [Solanum
tuberosum] GI:1420871; contains Pfam profile PF00083:
major facilitator superfamily protein
Length = 534
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +3
Query: 78 KTQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHAR 212
K Q V S++H S T P PP P P K S C +H R
Sbjct: 243 KDMQRVMSRSHISDEATTDPPPPPP---PPSYKLFSRCFFRLHGR 284
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,013,488
Number of Sequences: 28952
Number of extensions: 338532
Number of successful extensions: 1075
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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