Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060585.seq
         (686 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13382-1|CAA31759.1|  407|Drosophila melanogaster protein ( Dros...   151   1e-36
BT025959-1|ABG02203.1|  233|Drosophila melanogaster IP15855p pro...   151   1e-36
AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p pro...   151   1e-36
AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA...   151   1e-36
X06881-1|CAA29998.1|  123|Drosophila melanogaster protein ( Dros...   140   2e-33
AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p pro...    31   2.0  
AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-P...    31   2.0  
AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-P...    31   2.0  
AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p pro...    30   2.6  
AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4 ...    30   2.6  
AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear prot...    30   2.6  
AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB ...    30   2.6  
BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p pro...    29   4.5  
AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-P...    29   4.5  

>X13382-1|CAA31759.1|  407|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for put. ribosomal protein
           L1. ).
          Length = 407

 Score =  151 bits (365), Expect = 1e-36
 Identities = 78/139 (56%), Positives = 90/139 (64%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH     
Sbjct: 61  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNV 120

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPELPLVVADKVQEINKTKQGCHLS*GASKA 614
                               Q++G ++    E PLVV+D+VQ++ KTKQ   +     K 
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAV-IFLRRLKI 179

Query: 615 XSDILXVYQVSAVFRAGXG 671
            +DI  VY+ S  FRAG G
Sbjct: 180 WADIQKVYK-SQRFRAGRG 197



 Score = 72.1 bits (169), Expect = 6e-13
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           MSL  ARPLVSVY+EK+E  +     LP VFKAPIRPD+VN+VH  + +N+RQ Y VS+
Sbjct: 1   MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59


>BT025959-1|ABG02203.1|  233|Drosophila melanogaster IP15855p
           protein.
          Length = 233

 Score =  151 bits (365), Expect = 1e-36
 Identities = 78/139 (56%), Positives = 90/139 (64%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH     
Sbjct: 61  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNV 120

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPELPLVVADKVQEINKTKQGCHLS*GASKA 614
                               Q++G ++    E PLVV+D+VQ++ KTKQ   +     K 
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAV-IFLRRLKI 179

Query: 615 XSDILXVYQVSAVFRAGXG 671
            +DI  VY+ S  FRAG G
Sbjct: 180 WADIQKVYK-SQRFRAGRG 197



 Score = 72.1 bits (169), Expect = 6e-13
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           MSL  ARPLVSVY+EK+E  +     LP VFKAPIRPD+VN+VH  + +N+RQ Y VS+
Sbjct: 1   MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59


>AY069485-1|AAL39630.1|  401|Drosophila melanogaster LD21756p
           protein.
          Length = 401

 Score =  151 bits (365), Expect = 1e-36
 Identities = 78/139 (56%), Positives = 90/139 (64%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH     
Sbjct: 61  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNV 120

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPELPLVVADKVQEINKTKQGCHLS*GASKA 614
                               Q++G ++    E PLVV+D+VQ++ KTKQ   +     K 
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAV-IFLRRLKI 179

Query: 615 XSDILXVYQVSAVFRAGXG 671
            +DI  VY+ S  FRAG G
Sbjct: 180 WADIQKVYK-SQRFRAGRG 197



 Score = 72.1 bits (169), Expect = 6e-13
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           MSL  ARPLVSVY+EK+E  +     LP VFKAPIRPD+VN+VH  + +N+RQ Y VS+
Sbjct: 1   MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59


>AE014297-4196|AAG22173.1|  401|Drosophila melanogaster CG5502-PA
           protein.
          Length = 401

 Score =  151 bits (365), Expect = 1e-36
 Identities = 78/139 (56%), Positives = 90/139 (64%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH     
Sbjct: 61  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRKVNV 120

Query: 435 XXXXXXXXXXXXXXXXXXXXQARGQLLKRFPELPLVVADKVQEINKTKQGCHLS*GASKA 614
                               Q++G ++    E PLVV+D+VQ++ KTKQ   +     K 
Sbjct: 121 NQRRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQAV-IFLRRLKI 179

Query: 615 XSDILXVYQVSAVFRAGXG 671
            +DI  VY+ S  FRAG G
Sbjct: 180 WADIQKVYK-SQRFRAGRG 197



 Score = 72.1 bits (169), Expect = 6e-13
 Identities = 35/59 (59%), Positives = 44/59 (74%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           MSL  ARPLVSVY+EK+E  +     LP VFKAPIRPD+VN+VH  + +N+RQ Y VS+
Sbjct: 1   MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRNNRQAYAVSE 59


>X06881-1|CAA29998.1|  123|Drosophila melanogaster protein (
           Drosophila gene forribosomal protein L1 fragment. ).
          Length = 123

 Score =  140 bits (338), Expect = 2e-33
 Identities = 65/107 (60%), Positives = 74/107 (69%)
 Frame = +3

Query: 261 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 440
           HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK +RRWH       
Sbjct: 1   HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTFRRWHRRVNVNQ 60

Query: 441 XXXXXXXXXXXXXXXXXXQARGQLLKRFPELPLVVADKVQEINKTKQ 581
                             Q++G ++    E PLVV+D+VQ++ KTKQ
Sbjct: 61  RRYALVSAIAASGVPALVQSKGHVIDGVSEFPLVVSDEVQKVQKTKQ 107


>AY113210-1|AAM29215.1|  872|Drosophila melanogaster AT06220p
           protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 293 TCCRP-NSACPWWWYS*VRSGC 355
           TCC P ++ CPW WY    +GC
Sbjct: 718 TCCMPCSNQCPWSWYYNPCTGC 739


>AE014296-2188|AAF49882.2|  271|Drosophila melanogaster CG17666-PB,
           isoform B protein.
          Length = 271

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 293 TCCRP-NSACPWWWYS*VRSGC 355
           TCC P ++ CPW WY    +GC
Sbjct: 117 TCCMPCSNQCPWSWYYNPCTGC 138


>AE014296-2187|AAN11857.1|  872|Drosophila melanogaster CG17666-PA,
           isoform A protein.
          Length = 872

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +2

Query: 293 TCCRP-NSACPWWWYS*VRSGC 355
           TCC P ++ CPW WY    +GC
Sbjct: 718 TCCMPCSNQCPWSWYYNPCTGC 739


>AY122259-1|AAM52771.1| 2176|Drosophila melanogaster SD09011p protein.
          Length = 2176

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 249  QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 380
            +G G  T  ES GT + V ++ R   GG   SG    G +  GG
Sbjct: 918  RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 961


>AL009192-2|CAA15686.1| 2342|Drosophila melanogaster EG:133E12.4
            protein.
          Length = 2342

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 249  QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 380
            +G G  T  ES GT + V ++ R   GG   SG    G +  GG
Sbjct: 1042 RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 1085


>AF242291-1|AAF63753.1| 2362|Drosophila melanogaster nuclear protein
            EAST protein.
          Length = 2362

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 249  QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 380
            +G G  T  ES GT + V ++ R   GG   SG    G +  GG
Sbjct: 1095 RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 1138


>AE014298-308|AAF45704.2| 2301|Drosophila melanogaster CG4399-PB
            protein.
          Length = 2301

 Score = 30.3 bits (65), Expect = 2.6
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 249  QGAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 380
            +G G  T  ES GT + V ++ R   GG   SG    G +  GG
Sbjct: 1042 RGGGSATHVESSGTLKTVIKLNRSSNGGVSGSGGLPTGTVIHGG 1085


>BT021357-1|AAX33505.1| 1953|Drosophila melanogaster LP14866p
           protein.
          Length = 1953

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 81  SIGSPTFSVGVFREE*DGAGCSQAPPVRVQG--AHPSGPG 194
           ++GSP ++VG       G G S APP  V    AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326


>AE014298-1786|AAF48179.2| 2528|Drosophila melanogaster CG32654-PC
           protein.
          Length = 2528

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 81  SIGSPTFSVGVFREE*DGAGCSQAPPVRVQG--AHPSGPG 194
           ++GSP ++VG       G G S APP  V    AH +G G
Sbjct: 287 AVGSPIYAVGASSAHSAGVGASPAPPTGVVAPPAHLAGIG 326


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,149,026
Number of Sequences: 53049
Number of extensions: 668687
Number of successful extensions: 3854
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3711
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 3013199100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)