Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060583.seq
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.3  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 514 YPVTSSNW*NRQLSKDNSASNGSGD 440
           Y  +S N+  R  +  NSASN SGD
Sbjct: 334 YTASSKNY--RSATGGNSASNSSGD 356


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 144 GRDXDRVHEDRRGLYLH 94
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 484 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 380
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 660 SPFLKETFFRELAA 619
           SP   ETFFREL A
Sbjct: 303 SPEEAETFFRELEA 316


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 660 SPFLKETFFRELAA 619
           SP   ETFFREL A
Sbjct: 303 SPEEAETFFRELEA 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,913
Number of Sequences: 336
Number of extensions: 3240
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)