Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060583.seq
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   153   2e-38
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    26   4.5  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    26   4.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   5.9  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  153 bits (372), Expect = 2e-38
 Identities = 71/106 (66%), Positives = 89/106 (83%), Gaps = 1/106 (0%)
 Frame = +2

Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
           K +   E  L SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY-GVTRSESHT 535
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGY G    + HT
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHT 152



 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +1

Query: 511 GNKIGKPHTVPCKVTGKCGSVTXRLIPAPRGTXIMSCGQFPKEGFFQEWAGV 666
           G  +G PHTVP KV+GKCGSVT RL+PAPRG  +++    P    F + AG+
Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAA---PVTKRFLQLAGI 192



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 20/31 (64%), Positives = 27/31 (87%)
 Frame = +3

Query: 162 KEDQKEWVPVTKLGRLVREGKIDKLESIYLF 254
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLY 58


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -1

Query: 520 SCYPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 353
           SCY   S +   R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 365 SCYMPESLS---RNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 200 RPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDE 316
           R    +++NR+T +  LV   +      +FF  P L+D+
Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 597  RGRNQPXCYRTTLAGDFARDGVWLSDLVT 511
            R RN+   YRT    +++ +G W   L+T
Sbjct: 958  RNRNEKLIYRTRPLAEYSTNGRWNQQLMT 986


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,273
Number of Sequences: 5004
Number of extensions: 55183
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)