Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060583.seq
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 144 4e-35
07_01_0756 + 5819367-5820038,5820847-5821005 140 1e-33
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 8e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 3.5
05_06_0155 - 26028923-26030263 29 3.5
02_05_1265 - 35326506-35326773,35326944-35327109,35327194-353273... 29 4.7
01_02_0104 + 11163634-11163691,11163929-11164193,11165041-111651... 29 4.7
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 6.2
04_03_0141 + 11767781-11767880,11767953-11769262 28 6.2
01_07_0351 + 42952504-42952692,42952824-42952910,42953039-429532... 28 6.2
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 144 bits (350), Expect = 4e-35
Identities = 72/100 (72%), Positives = 83/100 (83%), Gaps = 1/100 (1%)
Frame = +2
Query: 239 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GL
Sbjct: 64 EIYLHSLPVKEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGL 122
Query: 419 GVKCSKEVATAIRGAIILAKLSVLPVRRGY-GVTRSESHT 535
GVKC+KEVATAIRGAIILAKLSV+PVRRGY G + HT
Sbjct: 123 GVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGQPHT 162
Score = 71.3 bits (167), Expect = 7e-13
Identities = 30/43 (69%), Positives = 38/43 (88%)
Frame = +1
Query: 511 GNKIGKPHTVPCKVTGKCGSVTXRLIPAPRGTXIMSCGQFPKE 639
GNKIG+PHTVPCKVTGKCGSVT R++PAPRG+ I++ + PK+
Sbjct: 154 GNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVA-ARVPKK 195
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/30 (60%), Positives = 27/30 (90%)
Frame = +3
Query: 162 KEDQKEWVPVTKLGRLVREGKIDKLESIYL 251
++++++WVPVTKLGRLV+EG+ K+E IYL
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYL 67
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 140 bits (339), Expect = 1e-33
Identities = 71/106 (66%), Positives = 84/106 (79%), Gaps = 1/106 (0%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L SLP+KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD
Sbjct: 61 KIHKIEEIYLHSLPVKEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDG 119
Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY-GVTRSESHT 535
+GH+GLGVKC+KEVATAIRGAIILAKLSV+PVRRGY G + HT
Sbjct: 120 DGHVGLGVKCAKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHT 165
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +1
Query: 511 GNKIGKPHTVPCKVTGKCGSVTXRLIPAPRGTXIMSCGQFPKE 639
GNKIGKPHTVPCKVTGKCGSVT R++PAPRG+ I++ PK+
Sbjct: 157 GNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVA-AHVPKK 198
Score = 48.8 bits (111), Expect = 4e-06
Identities = 19/30 (63%), Positives = 27/30 (90%)
Frame = +3
Query: 162 KEDQKEWVPVTKLGRLVREGKIDKLESIYL 251
++++++WVPVTKLGRLV+E KI K+E IYL
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYL 70
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 308 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 487
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 488 LPV 496
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 380 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 475
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 526 KPHTVPCKVTGKCGSVTXRLIPAPRGTXIMSCGQFPKE 639
KPHTV CKV K GSVT R++ P G+ +++ + PK+
Sbjct: 47 KPHTVSCKVADKYGSVTVRMMLPPMGSSVVAT-RVPKK 83
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -1
Query: 442 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 326
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>05_06_0155 - 26028923-26030263
Length = 446
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 185 SCHQTRPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLN 310
SCH P R N RE+L S+P + D F +L+
Sbjct: 52 SCHSNVPELIRAMNAPLREYLRSSVPSARAVVFDMFCACALD 93
>02_05_1265 -
35326506-35326773,35326944-35327109,35327194-35327351,
35327779-35327966,35328046-35328156,35328311-35328476,
35328718-35328885,35329374-35330623
Length = 824
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -3
Query: 695 RSLRFXQFLVTPAHS*KKPSLGNWPQDIIXVPRGAGISRIVTEPHLPVT-LQGTVCGF-- 525
RS+ + V ++ N+P+ ++ V RG + +V PH+ + L+ T GF
Sbjct: 667 RSMAADRLTVLSEEDAQEDDAFNYPEGLVLVQRGGDENSVVVGPHIRGSRLRSTAAGFAE 726
Query: 524 -PILLP 510
+LLP
Sbjct: 727 VDLLLP 732
>01_02_0104 +
11163634-11163691,11163929-11164193,11165041-11165163,
11165275-11165311,11165320-11165514,11165673-11165792,
11165979-11166173
Length = 330
Score = 28.7 bits (61), Expect = 4.7
Identities = 24/101 (23%), Positives = 35/101 (34%)
Frame = +2
Query: 326 IMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRG 505
+ P + G T + A GD G G +T I L + ++ +R
Sbjct: 50 VRPAASGGQTGGSTAVRPAAATGDFGGQTGDSTSVRPAASTRSDRQINLGQTTIRRIRGY 109
Query: 506 YGVTRSESHTPSLAKSPASVVL*QXG*FLPLVVLELCLAAS 628
+ + HTPSL S + Q P L CL S
Sbjct: 110 HKLKLLHLHTPSLVLSSLQLAAVQAAAEFPHEPLPPCLPPS 150
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = +2
Query: 413 GLGVKCSKEVATAIRGAIILAKLSVLPVRRGYGVTRSESHTPSLAKSPAS 562
G G S VA+ G+I + SV P GY T + P+ PAS
Sbjct: 230 GNGAVSSPYVASVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPAS 279
>04_03_0141 + 11767781-11767880,11767953-11769262
Length = 469
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 192 TKLGRLVREGKIDKLESIYLFLYQSKNSRSLISSSARP 305
T++G L + ++ LES F+Y + S SSSARP
Sbjct: 428 TRVGTL--DSRVQMLESSQAFVYHGRRDASHPSSSARP 463
>01_07_0351 +
42952504-42952692,42952824-42952910,42953039-42953257,
42953329-42953502,42954799-42954852,42954983-42955123,
42955599-42955637,42956689-42957045
Length = 419
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 586 IPAPRGTXIMSCGQFPKEGF 645
+ +PR T M G FPKEGF
Sbjct: 342 VNSPRSTTPMGSGHFPKEGF 361
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,425
Number of Sequences: 37544
Number of extensions: 404179
Number of successful extensions: 1095
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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