Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060583.seq
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 140 7e-34
Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 4.2
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 5.5
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 5.5
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am... 28 7.3
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am... 28 7.3
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 27 9.7
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 27 9.7
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 140 bits (340), Expect = 7e-34
Identities = 73/97 (75%), Positives = 80/97 (82%)
Frame = +2
Query: 218 RKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 397
+K E L SLPIKEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD
Sbjct: 70 KKITTLEEIYLNSLPIKEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGD 128
Query: 398 NNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGY 508
+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+PVRRGY
Sbjct: 129 HAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGY 165
Score = 68.5 bits (160), Expect = 4e-12
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +1
Query: 511 GNKIGKPHTVPCKVTGKCGSVTXRLIPAPRGTXIMS 618
GNKIG PHTVPCKVTGKC SV RLIPAPRGT I+S
Sbjct: 167 GNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVS 202
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/29 (68%), Positives = 22/29 (75%)
Frame = +3
Query: 165 EDQKEWVPVTKLGRLVREGKIDKLESIYL 251
E + EW PVTKLGRLV+E KI LE IYL
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYL 80
>Z66523-7|CAA91416.2| 409|Caenorhabditis elegans Hypothetical
protein M05D6.7 protein.
Length = 409
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 195 KLGRLVREGKIDKLESIYLFLYQSKNSRSL 284
K+G ++REGK++K S +Y+ NS+SL
Sbjct: 107 KIGNIIREGKVEKNVSNDNKIYELWNSKSL 136
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 505 TSSNW*NRQLSKDNSASNGSG 443
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 319 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 462
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 319 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 462
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform a protein.
Length = 1212
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +2
Query: 431 SKEVATAIRGAIILAKLSVLPVRRGYGVTRSESHTPSLAKSPASVVL*QXG*FLPLVVLE 610
S++++T +R +I+ ++PVR+ + ++ P A+SP + L + V+LE
Sbjct: 613 SRKLSTVVRRSILRPISDIIPVRKRLISFKQQAMNPYEAESPDELALIEGAALYDYVLLE 672
>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
amphipath transporters(subfamily iv p-type atpase)
protein 4, isoform b protein.
Length = 1454
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +2
Query: 431 SKEVATAIRGAIILAKLSVLPVRRGYGVTRSESHTPSLAKSPASVVL*QXG*FLPLVVLE 610
S++++T +R +I+ ++PVR+ + ++ P A+SP + L + V+LE
Sbjct: 613 SRKLSTVVRRSILRPISDIIPVRKRLISFKQQAMNPYEAESPDELALIEGAALYDYVLLE 672
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 263 LVKKQVNALEFVDFSFANKTAEFGDRN-PLFLVF 165
L + ALEF++ F A FGDRN P VF
Sbjct: 245 LASNRTRALEFLNRYFQEDQAYFGDRNEPSMTVF 278
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 167 RPERVGSCHQTRPSCSRRKNRQTREHLLVSLPI-KEFEIIDFFLGPSLNDEVLKIMP 334
RP R G T+PS SRR + T VS+P +F I LG +L + ++P
Sbjct: 2145 RPHRAGKGTITKPSGSRRGAQMTVAR-TVSIPFSSDFSGIRMRLGTTLASTSVGVIP 2200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,464,365
Number of Sequences: 27780
Number of extensions: 329009
Number of successful extensions: 958
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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