Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060582.seq
(684 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284; Eukary... 170 3e-41
UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5; Eukaryot... 153 5e-36
UniRef50_UPI0000D9B7B9 Cluster: PREDICTED: similar to ribosomal ... 150 3e-35
UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2; Cyt... 132 1e-29
UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26; Eukaryo... 130 2e-29
UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S riboso... 118 1e-25
UniRef50_O55213 Cluster: Ribosomal protein S2; n=11; Coelomata|R... 107 2e-22
UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1; Encephal... 104 2e-21
UniRef50_Q8TBR1 Cluster: MGC27348 protein; n=1; Homo sapiens|Rep... 96 8e-19
UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S riboso... 90 5e-17
UniRef50_A0E2R7 Cluster: Chromosome undetermined scaffold_75, wh... 84 4e-15
UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n... 81 2e-14
UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length... 81 2e-14
UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured m... 81 2e-14
UniRef50_UPI0000E20F35 Cluster: PREDICTED: similar to ribosomal ... 81 2e-14
UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6; Euryarc... 78 2e-13
UniRef50_Q6CKL2 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 77 3e-13
UniRef50_Q16TN2 Cluster: Putative uncharacterized protein; n=1; ... 77 4e-13
UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7; Archaea... 74 3e-12
UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n... 73 9e-12
UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5; Sulfolo... 73 9e-12
UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8; Euthe... 71 2e-11
UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum l... 71 3e-11
UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3; Halobac... 70 6e-11
UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n... 68 2e-10
UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34; Archae... 68 2e-10
UniRef50_UPI0000D9ACAD Cluster: PREDICTED: similar to 40S riboso... 67 3e-10
UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus N... 64 4e-09
UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n... 63 7e-09
UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella... 62 9e-09
UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n... 60 4e-08
UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1; Cenarch... 60 7e-08
UniRef50_Q7XYL2 Cluster: Ribosomal protein rpS5; n=1; Bigelowiel... 58 3e-07
UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 ... 55 1e-06
UniRef50_O15579 Cluster: Ribosomal protein S2; n=1; Entamoeba hi... 55 2e-06
UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2; Firmicut... 55 2e-06
UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n... 53 6e-06
UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22; Bacteri... 53 7e-06
UniRef50_Q6YR05 Cluster: 30S ribosomal protein S5; n=22; Bacteri... 52 1e-05
UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3; Mycoplas... 52 1e-05
UniRef50_Q7Y258 Cluster: Ribosomal protein S5 precursor; n=1; Ch... 51 2e-05
UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellul... 51 2e-05
UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1; Nanoarc... 50 7e-05
UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6; Bacteria... 49 1e-04
UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3; Fusobact... 49 1e-04
UniRef50_Q6F1X7 Cluster: 30S ribosomal protein S5; n=32; Bacteri... 48 2e-04
UniRef50_P59122 Cluster: 30S ribosomal protein S5; n=40; Bacteri... 48 2e-04
UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2; Deinococ... 47 4e-04
UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast p... 47 4e-04
UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S riboso... 46 7e-04
UniRef50_A0T0Y9 Cluster: Chloroplast 30S ribosomal protein S5; n... 46 9e-04
UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole ge... 46 0.001
UniRef50_Q92QF3 Cluster: 30S ribosomal protein S5; n=203; cellul... 46 0.001
UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellula... 45 0.002
UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128; Bacter... 44 0.003
UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17; Bacteri... 44 0.003
UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5; Bacteria... 43 0.006
UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellula... 42 0.019
UniRef50_Q6AP53 Cluster: 30S ribosomal protein S5; n=8; Bacteria... 41 0.024
UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n... 41 0.032
UniRef50_Q82X75 Cluster: 30S ribosomal protein S5; n=11; Bacteri... 40 0.043
UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7; Chlamydi... 39 0.099
UniRef50_O15578 Cluster: Ribosomal protein S2; n=1; Entamoeba hi... 39 0.13
UniRef50_Q5FFR5 Cluster: 30S ribosomal protein S5; n=5; canis gr... 38 0.17
UniRef50_UPI000023F324 Cluster: hypothetical protein FG00649.1; ... 38 0.23
UniRef50_A7CZB7 Cluster: Ribosomal protein S5; n=1; Opitutaceae ... 38 0.30
UniRef50_A4R1A2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.30
UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9; Firmicut... 38 0.30
UniRef50_Q4EF76 Cluster: Putative uncharacterized protein; n=1; ... 37 0.40
UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep... 36 0.92
UniRef50_Q8X048 Cluster: Related to ribosomal protein S5; n=1; N... 36 1.2
UniRef50_Q2GVX5 Cluster: Putative uncharacterized protein; n=1; ... 36 1.2
UniRef50_Q25815 Cluster: Rps5 protein; n=1; Plasmodium falciparu... 35 2.1
UniRef50_P33759 Cluster: 37S ribosomal protein S5, mitochondrial... 35 2.1
UniRef50_A2RAI1 Cluster: Remark: literature about the mitochondr... 34 2.8
UniRef50_UPI000056598D Cluster: UPI000056598D related cluster; n... 34 3.7
UniRef50_A7RP03 Cluster: Predicted protein; n=1; Nematostella ve... 33 6.5
UniRef50_A0VB43 Cluster: Phage SPO1 DNA polymerase-related prote... 33 8.6
>UniRef50_P15880 Cluster: 40S ribosomal protein S2; n=284;
Eukaryota|Rep: 40S ribosomal protein S2 - Homo sapiens
(Human)
Length = 293
Score = 170 bits (413), Expect = 3e-41
Identities = 95/136 (69%), Positives = 100/136 (73%), Gaps = 2/136 (1%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L SLPIKE EIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 74 KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDY 133
Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
NGH+GLGVKCSKEVATAIRGAIILAKLS++PVRR Y G HT P VL
Sbjct: 134 NGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLV 193
Query: 575 QSG*XLLPRGTGIVSA 622
+ PRGTGIVSA
Sbjct: 194 RL--IPAPRGTGIVSA 207
Score = 47.6 bits (108), Expect = 3e-04
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLFLYQSKNS 275
K + K W+PVTKLGRLV++ KI LE IYLF K S
Sbjct: 54 KAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKES 91
>UniRef50_O74892 Cluster: 40S ribosomal protein S2; n=5;
Eukaryota|Rep: 40S ribosomal protein S2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 253
Score = 153 bits (370), Expect = 5e-36
Identities = 81/145 (55%), Positives = 101/145 (69%), Gaps = 2/145 (1%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L SLPIKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48 KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106
Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
+GH+GLG+KC+KEVATAIRGAII+ KLS++P+RR Y G HT P V
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTV 166
Query: 575 QSG*XLLPRGTGIVSAASFLRSFFQ 649
+ PRG G+V AA + F Q
Sbjct: 167 RL--VPAPRGAGLV-AAPVTKRFLQ 188
Score = 48.8 bits (111), Expect = 1e-04
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
++++K WVPVTKLGRLV+ GKI +E IYL+
Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLY 58
>UniRef50_UPI0000D9B7B9 Cluster: PREDICTED: similar to ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to ribosomal protein S2 - Macaca mulatta
Length = 272
Score = 150 bits (364), Expect = 3e-35
Identities = 86/139 (61%), Positives = 95/139 (68%), Gaps = 2/139 (1%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L SLPIKE EIIDFFLG SL DEVLKIMPVQKQT AGQ TRFKAFV IGD
Sbjct: 14 KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTCAGQHTRFKAFVPIGDY 73
Query: 401 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLX 574
NGH+GL VKCSKEVATAIRGAIILAKLS++PV R Y G HT P S VL
Sbjct: 74 NGHVGLSVKCSKEVATAIRGAIILAKLSIVPVCRGYWGNKIGKPHTVPCKVTGRCSSVLV 133
Query: 575 QSG*XLLPRGTGIVSAASF 631
L+P +++A +F
Sbjct: 134 H----LIPAPEQVMAALNF 148
Score = 35.9 bits (79), Expect = 0.92
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +3
Query: 183 VPVTKLGRLVREGKIDKLESIYLFLYQSKNS 275
+PVTKLG L+ + KI LE IYLF K S
Sbjct: 1 MPVTKLGHLINDMKIKSLEEIYLFSLPIKES 31
>UniRef50_A4S964 Cluster: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2; n=12;
Eukaryota|Rep: Cytosolic 80S ribosomal protein S2;
Cytosolic 40S small ribosomal subunit protein S2 -
Ostreococcus lucimarinus CCE9901
Length = 273
Score = 132 bits (318), Expect = 1e-29
Identities = 72/133 (54%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Frame = +2
Query: 239 EHL-LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIG 415
EH+ L SLPIKE +I++ F+G L DEV+KI PVQKQT AGQR RFKAFV +GD NGHIG
Sbjct: 69 EHIFLFSLPIKEHQIVEHFIGGELKDEVMKICPVQKQTTAGQRMRFKAFVVVGDCNGHIG 128
Query: 416 LGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*X 589
LGVK KEVA +I+G++ILAKL+++PVRR Y G HT P+ V +
Sbjct: 129 LGVKACKEVAHSIQGSMILAKLNIVPVRRGYWGSKLGEPHTIPTKVHGKCGSVHVRL--I 186
Query: 590 LLPRGTGIVSAAS 628
PRG GIV++ +
Sbjct: 187 PAPRGAGIVASGT 199
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 165 EDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
+D+ WVP TKLGRLV++GKI LE I+LF
Sbjct: 45 DDKDVWVPCTKLGRLVQQGKIKSLEHIFLF 74
>UniRef50_P25443 Cluster: 40S ribosomal protein S2; n=26;
Eukaryota|Rep: 40S ribosomal protein S2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 254
Score = 130 bits (315), Expect = 2e-29
Identities = 73/130 (56%), Positives = 89/130 (68%), Gaps = 2/130 (1%)
Frame = +2
Query: 239 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
E L SLP+KEF+IID L P L DEV+ I PVQKQTRAGQRTRFKA V +GD+NGH+GL
Sbjct: 55 EIFLHSLPVKEFQIIDTLL-PGLQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGL 113
Query: 419 GVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHTPSLARSPASVVLXQSG*XL- 592
G+K +KEVA AIR II+AKLSV+P+RR Y G H SLA + +
Sbjct: 114 GIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPH--SLATKTTGKCGSVTVRLIP 171
Query: 593 LPRGTGIVSA 622
PRG+GIV++
Sbjct: 172 APRGSGIVAS 181
Score = 44.0 bits (99), Expect = 0.003
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 168 DQKXWVPVTKLGRLVREGKIDKLESIYL 251
++K WVPVTKLGRLV+ GKI +E I+L
Sbjct: 31 EEKGWVPVTKLGRLVKAGKITTIEEIFL 58
>UniRef50_UPI00005A5FBC Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 237
Score = 118 bits (285), Expect = 1e-25
Identities = 69/106 (65%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
DEVLKIMPVQKQT AGQRTRF AFVAIGD NGH GLGVKCSKEVATAIR AIILAKLS++
Sbjct: 48 DEVLKIMPVQKQTCAGQRTRFTAFVAIGDYNGHFGLGVKCSKEVATAIREAIILAKLSIV 107
Query: 491 PVRRXY-GVTXSXSHT-PSLARSPASVVLXQSG*XLLPRGTGIVSA 622
P+R+ Y G +T P VL PRGTG+VSA
Sbjct: 108 PLRQGYWGNKIGKPNTVPCKVTGHCGSVLVCL--IPAPRGTGMVSA 151
>UniRef50_O55213 Cluster: Ribosomal protein S2; n=11; Coelomata|Rep:
Ribosomal protein S2 - Rattus norvegicus (Rat)
Length = 121
Score = 107 bits (257), Expect = 2e-22
Identities = 53/66 (80%), Positives = 55/66 (83%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L SLPIKE EIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 49 KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDY 108
Query: 401 NGHIGL 418
NGH+GL
Sbjct: 109 NGHVGL 114
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLFLYQSKNS 275
K + K W+PVTKLGRLV++ KI LE IYLF K S
Sbjct: 29 KAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKES 66
>UniRef50_Q8SRG6 Cluster: 40S RIBOSOMAL PROTEIN S2; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S2 -
Encephalitozoon cuniculi
Length = 242
Score = 104 bits (250), Expect = 2e-21
Identities = 58/123 (47%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Frame = +2
Query: 263 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 442
I+E EI+D G S+ +EVL I VQKQTRAGQ+TR KA V +GD GH+G+G K SKE
Sbjct: 49 IREPEIVDLLCGNSIKEEVLSIKSVQKQTRAGQKTRIKAVVVVGDRKGHVGIGTKASKEA 108
Query: 443 ATAIRGAIILAKLSVLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLL--PRGTGIV 616
A+AIRGAI AK ++ PVR G+ P S S ++ PRGTGI+
Sbjct: 109 ASAIRGAIARAKCAIRPVR--LGLWDGAQGKPHTVSCKGSGKCGTSVVQVIPAPRGTGII 166
Query: 617 SAA 625
S +
Sbjct: 167 SGS 169
Score = 33.5 bits (73), Expect = 4.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
++++ W+P T +GRLV+ KI LE I+ F
Sbjct: 15 RKEESEWIPKTAVGRLVKMLKITSLEQIFKF 45
>UniRef50_Q8TBR1 Cluster: MGC27348 protein; n=1; Homo sapiens|Rep:
MGC27348 protein - Homo sapiens (Human)
Length = 172
Score = 95.9 bits (228), Expect = 8e-19
Identities = 48/65 (73%), Positives = 52/65 (80%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L SLPIKE EIIDFFLG SL DEVLKIMPV+K+TRAGQRTRFKAFVAI D
Sbjct: 2 KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVRKETRAGQRTRFKAFVAIRDY 61
Query: 401 NGHIG 415
NG+ G
Sbjct: 62 NGYAG 66
>UniRef50_UPI00005A548A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S2 - Canis familiaris
Length = 213
Score = 89.8 bits (213), Expect = 5e-17
Identities = 52/89 (58%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Frame = +2
Query: 362 RTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT- 535
+ RFKAFVAIGD+NG +G GVKCSKE ATAIRGA+ILAKLS+LPV R Y G HT
Sbjct: 61 KIRFKAFVAIGDDNGQVGPGVKCSKEAATAIRGAVILAKLSILPVPRGYWGNEIRKPHTV 120
Query: 536 PSLARSPASVVLXQSG*XLLPRGTGIVSA 622
P VL + PRGTG VSA
Sbjct: 121 PGKVTGRCGSVLVRL--IPAPRGTGFVSA 147
>UniRef50_A0E2R7 Cluster: Chromosome undetermined scaffold_75, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_75,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 327
Score = 83.8 bits (198), Expect = 4e-15
Identities = 41/68 (60%), Positives = 54/68 (79%)
Frame = +2
Query: 254 SLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCS 433
S+PIKE++I+D FL +L +E L I PVQKQT AGQ+TRFKA+V +GD++ HIGLG K +
Sbjct: 89 SIPIKEYQIVDHFL-KTLKEEPLAIGPVQKQTCAGQKTRFKAYVVVGDSHQHIGLGWKSA 147
Query: 434 KEVATAIR 457
KEV AI+
Sbjct: 148 KEVQGAIQ 155
Score = 41.5 bits (93), Expect = 0.019
Identities = 17/28 (60%), Positives = 23/28 (82%)
Frame = +3
Query: 171 QKXWVPVTKLGRLVREGKIDKLESIYLF 254
++ WVP+TKLGRLV+ GKI LE+I+ F
Sbjct: 61 EQEWVPLTKLGRLVKGGKIKSLETIFQF 88
>UniRef50_UPI0000DC060C Cluster: UPI0000DC060C related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC060C UniRef100 entry -
Rattus norvegicus
Length = 206
Score = 81.4 bits (192), Expect = 2e-14
Identities = 53/100 (53%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Frame = +2
Query: 239 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
E L SLPIKE EIID FLG +L DEVLK +P QK TR GQ +KA GD NGH+
Sbjct: 68 EIYLFSLPIKETEIIDIFLGAALKDEVLKSLPEQKGTRVGQ--YYKA----GDYNGHVIT 121
Query: 419 GVKCSKEVATAIRGAIILAKLSVLPVRRXY-GVTXSXSHT 535
G+ EVA I+ IIL KL ++PV R Y G S HT
Sbjct: 122 GL---DEVANTIQRVIILTKLPIVPVWRGYCGSKTSKPHT 158
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = +1
Query: 511 GNXIGKPHTVPCKVTGKCGSXTVRLIXAP 597
G+ KPHTV CKVTG GS ++ LI AP
Sbjct: 150 GSKTSKPHTVLCKVTGH-GSVSLHLIPAP 177
>UniRef50_Q9DC49 Cluster: Adult male lung cDNA, RIKEN full-length
enriched library, clone:1200003H09 product:ribosomal
protein S2, full insert sequence; n=13; Eutheria|Rep:
Adult male lung cDNA, RIKEN full-length enriched
library, clone:1200003H09 product:ribosomal protein S2,
full insert sequence - Mus musculus (Mouse)
Length = 235
Score = 81.4 bits (192), Expect = 2e-14
Identities = 41/52 (78%), Positives = 42/52 (80%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFK 376
K + E L SLPIKE EIIDFFLG SL DEVLKIMPVQKQTRAGQRTRFK
Sbjct: 74 KIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFK 125
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLFLYQSKNS 275
K + K W+PVTKLGRLV++ KI LE IYLF K S
Sbjct: 54 KAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKES 91
Score = 34.3 bits (75), Expect = 2.8
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = +1
Query: 547 KVTGKCGSXTVRLIXAPSWYWNCVCGQFPKKLL 645
KVTG+CGS VRLI AP V PKKLL
Sbjct: 125 KVTGRCGSVLVRLIPAPRG-TGIVSAPVPKKLL 156
>UniRef50_Q673Q8 Cluster: Ribosomal protein S5; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein S5 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 202
Score = 81.4 bits (192), Expect = 2e-14
Identities = 40/91 (43%), Positives = 60/91 (65%)
Frame = +2
Query: 239 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
E L LPI+E EI+D L P L+D+VL + +Q+ T +G+R RF +G+++G++GL
Sbjct: 12 EALATGLPIREVEIVDALL-PGLDDDVLAVNMIQRMTDSGRRVRFNVLCVVGNSDGYVGL 70
Query: 419 GVKCSKEVATAIRGAIILAKLSVLPVRRXYG 511
+ KEVA+ IR AI AKL+++PV R G
Sbjct: 71 AICKGKEVASTIRKAIDKAKLNMIPVMRGNG 101
>UniRef50_UPI0000E20F35 Cluster: PREDICTED: similar to ribosomal
protein S2; n=1; Pan troglodytes|Rep: PREDICTED: similar
to ribosomal protein S2 - Pan troglodytes
Length = 223
Score = 81.0 bits (191), Expect = 2e-14
Identities = 45/109 (41%), Positives = 62/109 (56%)
Frame = +2
Query: 161 QGRPEXVGSCHQTRPSCSRRKNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 340
QG + P K + + +L SLPIKEFE+ DF LG L D+VLK+M VQ
Sbjct: 116 QGLAPELSKAASESPQVKDMKMKSLKVYLF-SLPIKEFEVTDFLLGVPLKDKVLKLMFVQ 174
Query: 341 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 487
KQ +AG+R RFK V I D N ++ LGV+ KE+ A+ +L+ + V
Sbjct: 175 KQPKAGRRIRFKVIVTIRDCNDNVSLGVEWPKELLIAVCRTNVLSIILV 223
>UniRef50_Q6LXD3 Cluster: 30S ribosomal protein S5P; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S5P -
Methanococcus maripaludis
Length = 225
Score = 77.8 bits (183), Expect = 2e-13
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Frame = +2
Query: 257 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 436
LP+ E EI+D L P L ++VL + VQ+ ++G+R R++A V +G+ NG++G+G+ SK
Sbjct: 42 LPLLEPEIVDALL-PDLEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSK 100
Query: 437 EVATAIRGAIILAKLSVLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLL--PRGTG 610
EV AIR AI AKLS++ VR G +P A LL PRG G
Sbjct: 101 EVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVG 160
Query: 611 IVS 619
+V+
Sbjct: 161 LVA 163
>UniRef50_Q6CKL2 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome F of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 262
Score = 77.4 bits (182), Expect = 3e-13
Identities = 40/86 (46%), Positives = 60/86 (69%)
Frame = -3
Query: 511 PVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYR 332
PVTSS+W N QL D++ S+G+ +FL+ L+TQT++TV V N + LE+ +L+ + L L R
Sbjct: 113 PVTSSDWDNGQLGDDDTGSDGTSNFLSGLNTQTDVTVGVTNDDDSLESGSLTSSGLLLDR 172
Query: 331 HDL*NLIIQGRAEEEINDLEFFDW*R 254
D+ N I+Q ++ +NDLEF DW R
Sbjct: 173 LDVHNFILQ-VWQQLVNDLEFLDWQR 197
>UniRef50_Q16TN2 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 181
Score = 77.0 bits (181), Expect = 4e-13
Identities = 39/83 (46%), Positives = 57/83 (68%)
Frame = -3
Query: 511 PVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYR 332
PV S++ N QL +D+S ++G G FLAAL QT++ V V +G++ LE L+GT L L
Sbjct: 32 PVASTHRNNGQLGQDDSPTDGGGHFLAALDAQTDVAVAVTDGDEGLEARTLTGTGLLLDG 91
Query: 331 HDL*NLIIQGRAEEEINDLEFFD 263
HDL + ++Q A+EEI+DLE F+
Sbjct: 92 HDLQHFVLQRAAQEEIDDLELFN 114
>UniRef50_Q6L1A7 Cluster: 30S ribosomal protein S5P; n=7;
Archaea|Rep: 30S ribosomal protein S5P - Picrophilus
torridus
Length = 221
Score = 74.1 bits (174), Expect = 3e-12
Identities = 35/91 (38%), Positives = 58/91 (63%)
Frame = +2
Query: 239 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
E L LP+KE++I+D+ + P L DEV+ I Q+ T +G+R + +G+ NG++G+
Sbjct: 25 EALHSKLPLKEYQIVDYLI-PDLKDEVINIERAQRMTDSGRRMNYSITAVVGNGNGYVGV 83
Query: 419 GVKCSKEVATAIRGAIILAKLSVLPVRRXYG 511
G +KE A AI+ AI AKL+++ ++R G
Sbjct: 84 GRGKAKEAAPAIKKAIDNAKLNIIEIKRGCG 114
Score = 34.7 bits (76), Expect = 2.1
Identities = 22/46 (47%), Positives = 26/46 (56%)
Frame = +1
Query: 523 GKPHTVPCKVTGKCGSXTVRLIXAPSWYWNCVCGQFPKKLLSRLAG 660
GKPHT+P V GK GS +V L AP V G K +L R+AG
Sbjct: 121 GKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAV-GDVVKVIL-RMAG 164
>UniRef50_UPI0000D62CF0 Cluster: UPI0000D62CF0 related cluster; n=1;
Mus musculus|Rep: UPI0000D62CF0 UniRef100 entry - Mus
musculus
Length = 215
Score = 72.5 bits (170), Expect = 9e-12
Identities = 38/66 (57%), Positives = 48/66 (72%)
Frame = +2
Query: 257 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 436
LP+KEFEI DFFL SL D+VLKI+P+ + R Q TRF +F I + GH G+GVKCSK
Sbjct: 18 LPVKEFEINDFFLEASLKDKVLKIIPLSR-FRNDQWTRFNSFDTI-NYGGHNGIGVKCSK 75
Query: 437 EVATAI 454
+V TA+
Sbjct: 76 KVGTAV 81
>UniRef50_Q9UX87 Cluster: 30S ribosomal protein S5P; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S5P -
Sulfolobus solfataricus
Length = 214
Score = 72.5 bits (170), Expect = 9e-12
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = +2
Query: 254 SLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCS 433
+LPI E EI+D L P L EV+ I VQKQT AG+ +R+K V +G+ +G++ +G +
Sbjct: 38 NLPITEPEIVDVLL-PKLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKA 96
Query: 434 KEVATAIRGAIILAKLSVLPVRRXYG 511
K++ AI+ AI AK++++PVRR G
Sbjct: 97 KQLRVAIQKAIRDAKMNIIPVRRGCG 122
>UniRef50_UPI0000500CC2 Cluster: ribosomal protein S2; n=8;
Eutheria|Rep: ribosomal protein S2 - Rattus norvegicus
Length = 233
Score = 71.3 bits (167), Expect = 2e-11
Identities = 37/52 (71%), Positives = 39/52 (75%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFK 376
K + E L SLPIK EIIDFFLG SL +EVLK MPVQKQTRAGQ TRFK
Sbjct: 74 KIKSLEEIYLFSLPIKGSEIIDFFLGASLKNEVLKTMPVQKQTRAGQWTRFK 125
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLFLYQSKNS 275
K + K W+P TKLG LV++ KI LE IYLF K S
Sbjct: 54 KAEDKEWIPFTKLGHLVKDMKIKSLEEIYLFSLPIKGS 91
Score = 32.7 bits (71), Expect = 8.6
Identities = 18/33 (54%), Positives = 19/33 (57%)
Frame = +1
Query: 547 KVTGKCGSXTVRLIXAPSWYWNCVCGQFPKKLL 645
KVTG+CGS VRL AP V PKKLL
Sbjct: 125 KVTGRCGSVLVRLFSAPRG-TGIVSAPVPKKLL 156
>UniRef50_A7D107 Cluster: Ribosomal protein S5; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein S5 -
Halorubrum lacusprofundi ATCC 49239
Length = 265
Score = 70.9 bits (166), Expect = 3e-11
Identities = 37/85 (43%), Positives = 55/85 (64%)
Frame = +2
Query: 257 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSK 436
LP+KE EI+D L P L DEVL I VQ+ T +G+R +F+ VA+G+ +G++G
Sbjct: 84 LPLKEAEIVDQLL-PGLEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGYLGYAQARDD 142
Query: 437 EVATAIRGAIILAKLSVLPVRRXYG 511
+V AI+ AI +AKL+++ V R G
Sbjct: 143 QVGGAIQKAIDVAKLNIIEVDRGSG 167
>UniRef50_P26815 Cluster: 30S ribosomal protein S5P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S5P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 212
Score = 69.7 bits (163), Expect = 6e-11
Identities = 38/92 (41%), Positives = 57/92 (61%)
Frame = +2
Query: 236 REHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIG 415
+E L LP+KE E++D + P L DEVL I VQ+ T +G+R +F+ VA+G+ +G IG
Sbjct: 26 QEALNSGLPLKESEVVDQLV-PDLEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIG 84
Query: 416 LGVKCSKEVATAIRGAIILAKLSVLPVRRXYG 511
+V AI+ AI +AKL+++ V R G
Sbjct: 85 YAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCG 116
>UniRef50_UPI0000DBFACC Cluster: UPI0000DBFACC related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBFACC UniRef100 entry -
Rattus norvegicus
Length = 172
Score = 68.1 bits (159), Expect = 2e-10
Identities = 44/96 (45%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +2
Query: 338 QKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXYGVT 517
QKQT+ GQ+ R K F GD NGH+GLG+KCSKEVATA +G + +L + R V
Sbjct: 1 QKQTQTGQKNRLKTFCCYGDYNGHVGLGIKCSKEVATAFQGLWVKMQLGETRLSRSTLVQ 60
Query: 518 XS-XSHTPSLARSPASVVLXQSG*XLLPRGTGIVSA 622
SH S+ V L + PRGTGIVSA
Sbjct: 61 YKVTSHYGSVL-----VHLIPA-----PRGTGIVSA 86
>UniRef50_Q8U017 Cluster: 30S ribosomal protein S5P; n=34;
Archaea|Rep: 30S ribosomal protein S5P - Pyrococcus
furiosus
Length = 236
Score = 67.7 bits (158), Expect = 2e-10
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Frame = +2
Query: 263 IKEFEIIDFFLGPSLN----DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKC 430
IKE EIID L P +N EVL I + T +G+R RF+ A+G+ +G++GLG+
Sbjct: 44 IKEPEIIDVLL-PEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGH 102
Query: 431 SKEVATAIRGAIILAKLSVLPVRRXYG 511
KEV AIR AI AKL+++ ++R G
Sbjct: 103 GKEVGIAIRKAINYAKLNIIEIKRGCG 129
Score = 36.7 bits (81), Expect = 0.53
Identities = 23/45 (51%), Positives = 26/45 (57%)
Frame = +1
Query: 526 KPHTVPCKVTGKCGSXTVRLIXAPSWYWNCVCGQFPKKLLSRLAG 660
+PH+VP V GK GS VRLI P V G KK+L RLAG
Sbjct: 137 RPHSVPFAVEGKEGSVRVRLIPGPRGL-GLVIGDVGKKIL-RLAG 179
>UniRef50_UPI0000D9ACAD Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 170
Score = 67.3 bits (157), Expect = 3e-10
Identities = 37/75 (49%), Positives = 47/75 (62%)
Frame = +2
Query: 248 LVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVK 427
L S PIKEFE+ DF L L D+VLK+M V+KQ AG+ RFK V I N ++ LGV+
Sbjct: 10 LFSRPIKEFEVTDFLLEVPLKDKVLKLMFVKKQPEAGRWIRFKVIVTIRYCNDNVSLGVE 69
Query: 428 CSKEVATAIRGAIIL 472
KE+ A+ IIL
Sbjct: 70 RPKELLIAVCRTIIL 84
>UniRef50_A7DRN6 Cluster: Ribosomal protein S5; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S5
- Candidatus Nitrosopumilus maritimus SCM1
Length = 238
Score = 63.7 bits (148), Expect = 4e-09
Identities = 38/91 (41%), Positives = 53/91 (58%)
Frame = +2
Query: 239 EHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
E + + L I+E II L P L EV+ + +QK T GQ TRFKA VA G+ NG++G+
Sbjct: 66 EIIELGLRIQEAGIIKKLL-PDLKSEVVDVGIIQKMTSNGQSTRFKAIVATGNENGYLGI 124
Query: 419 GVKCSKEVATAIRGAIILAKLSVLPVRRXYG 511
G SK++ AI A A L+V P++ G
Sbjct: 125 GQGKSKQMRIAIEKATNAAYLNVNPIKMGCG 155
>UniRef50_UPI0000EB449D Cluster: UPI0000EB449D related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB449D UniRef100
entry - Canis familiaris
Length = 196
Score = 62.9 bits (146), Expect = 7e-09
Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Frame = +2
Query: 284 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 463
D L ++ + ++I +K+T AGQ+TRFKAFV D NGH+ L EVATAIRGA
Sbjct: 1 DMSLLAAVKGKGIRIKSYKKKTHAGQQTRFKAFVVFRDYNGHVSL------EVATAIRGA 54
Query: 464 IILAKLSVLPVRRXY-GVTXSXSHTPS--LARSPASVVLXQSG*XLLPRGTGIVSA 622
IIL + S+ + G + HT S + R SV++ PRGT I+SA
Sbjct: 55 IILDRSSIAIAWGGWSGNKIAKPHTVSCRVTRLYCSVLVHHIS---APRGTDILSA 107
>UniRef50_Q3LVZ1 Cluster: Ribosomal protein S2; n=1; Bigelowiella
natans|Rep: Ribosomal protein S2 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 266
Score = 62.5 bits (145), Expect = 9e-09
Identities = 38/119 (31%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Frame = +2
Query: 275 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 454
++++ G SL +V++ + V + T++G++ + K V +GD +GH+GLGVK S + I
Sbjct: 98 KLVNILFGKSLKYKVIQNLMVSRLTKSGRQYKKKVAVLVGDLDGHVGLGVKSSMDSKAGI 157
Query: 455 RGAIILAKLSVLPVRRXY-GVTXSXSHTPSLARS--PASVVLXQSG*XLLPRGTGIVSA 622
+ A+ AKL++ +RR Y + +T S SVV+ P+GTGIV++
Sbjct: 158 KAALRKAKLAITKIRRGYWEIEEGKPNTIKYKTSGKAGSVVVCIKP---APKGTGIVAS 213
>UniRef50_UPI000057EB46 Cluster: UPI000057EB46 related cluster; n=1;
Bos taurus|Rep: UPI000057EB46 UniRef100 entry - Bos
Taurus
Length = 258
Score = 60.5 bits (140), Expect = 4e-08
Identities = 52/130 (40%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Frame = +2
Query: 245 LLVSLPIKEFEIIDFFLGPSLNDEVLKIM---PVQKQTRAGQRTRFKAFVAIGDNNGHIG 415
L+ + IK E I FF S N L P+ KQT Q+TRFKA V +G + GH+
Sbjct: 63 LVKEMKIKSLEEIYFFSLLSRNLRSLTFSWEHPLIKQTCTDQQTRFKASVTVG-SYGHVS 121
Query: 416 LGVKCSKEVATAIRGAIILAKLSVLPVRRXYGVTXSXSH-TPSLARSPASVVLXQSG*XL 592
LG+K S EV AIILAKLS++PV G H P +L
Sbjct: 122 LGIKYSMEV------AIILAKLSIIPVETATGGKRLEPHMVPCRVTGRCGSLLVHL--IP 173
Query: 593 LPRGTGIVSA 622
PRGTG VSA
Sbjct: 174 APRGTGTVSA 183
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLFLYQSKNSRSLISSSARP 305
+ED+ W+P+TKLG LV+E KI LE IY F S+N RSL S P
Sbjct: 50 REDK--WLPITKLGCLVKEMKIKSLEEIYFFSLLSRNLRSLTFSWEHP 95
Score = 41.5 bits (93), Expect = 0.019
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 526 KPHTVPCKVTGKCGSXTVRLIXAP 597
+PH VPC+VTG+CGS V LI AP
Sbjct: 152 EPHMVPCRVTGRCGSLLVHLIPAP 175
>UniRef50_A0RUE7 Cluster: 30S ribosomal protein S5P; n=1;
Cenarchaeum symbiosum|Rep: 30S ribosomal protein S5P -
Cenarchaeum symbiosum
Length = 219
Score = 59.7 bits (138), Expect = 7e-08
Identities = 45/129 (34%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Frame = +2
Query: 263 IKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEV 442
I+E II L P L EV+ + +QK T GQ TRFKA VA G+ NG++G+G +K++
Sbjct: 55 IQESGIIKKLL-PDLKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQM 113
Query: 443 ATAIRGAIILAKLSVLPVRRXYG---VTXSXSHT-PSLARSPASVVLXQSG*XLLPRGTG 610
AI A A L+V P++ G H+ P R V+ + PRG G
Sbjct: 114 RIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEI--LPAPRGLG 171
Query: 611 IVSAASFLR 637
+V+ R
Sbjct: 172 LVAGGKIRR 180
>UniRef50_Q7XYL2 Cluster: Ribosomal protein rpS5; n=1; Bigelowiella
natans|Rep: Ribosomal protein rpS5 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 219
Score = 57.6 bits (133), Expect = 3e-07
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +2
Query: 296 GPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 475
GP ++VL++ + K + G+ F+A VA+GD NG IGLG +KEV A+ A + A
Sbjct: 68 GPRFEEKVLQVRRITKVVKGGKNMGFRALVAVGDKNGKIGLGCASAKEVMVAVEKASMEA 127
Query: 476 KLSVL--PVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
K + + P+ + Y S H + ASV++ + GTG+V+ +
Sbjct: 128 KKTAITVPITKDY----SLPHRLDVEWGAASVMMKPAS-----VGTGLVAGGA 171
>UniRef50_UPI0000DC0CDD Cluster: RBM27_MOUSE Isoform 2 of Q5SFM8 -
Mus musculus (Mouse); n=3; Murinae|Rep: RBM27_MOUSE
Isoform 2 of Q5SFM8 - Mus musculus (Mouse) - Rattus
norvegicus
Length = 266
Score = 55.2 bits (127), Expect = 1e-06
Identities = 36/67 (53%), Positives = 41/67 (61%)
Frame = +2
Query: 254 SLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCS 433
SL K+ II FFL SL DE IMPVQ QT R FK FV+I D + H+ L KCS
Sbjct: 84 SLLNKKSMIIGFFLRTSLRDE---IMPVQTQTWLPSRP-FKDFVSIRDYSSHVDLDDKCS 139
Query: 434 KEVATAI 454
K+ ATAI
Sbjct: 140 KKTATAI 146
>UniRef50_O15579 Cluster: Ribosomal protein S2; n=1; Entamoeba
histolytica|Rep: Ribosomal protein S2 - Entamoeba
histolytica
Length = 136
Score = 54.8 bits (126), Expect = 2e-06
Identities = 28/54 (51%), Positives = 36/54 (66%)
Frame = +2
Query: 257 LPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGL 418
+ IKE++I+D L L +EV+ I VQKQT G+ R KA VAIGD+NGH L
Sbjct: 60 IKIKEYQIVDHLLS-RLKEEVMTIDQVQKQTSRGKEPRLKASVAIGDHNGHRAL 112
Score = 34.3 bits (75), Expect = 2.8
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3
Query: 186 PVTKLGRLVREGKIDKLESIYLF 254
PVTKLGRLV++GK+ ++ I+ F
Sbjct: 36 PVTKLGRLVKDGKVKSIDQIFEF 58
>UniRef50_Q9PQP3 Cluster: 30S ribosomal protein S5; n=2;
Firmicutes|Rep: 30S ribosomal protein S5 - Ureaplasma
parvum (Ureaplasma urealyticum biotype 1)
Length = 203
Score = 54.8 bits (126), Expect = 2e-06
Identities = 36/106 (33%), Positives = 55/106 (51%)
Frame = +2
Query: 302 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 481
+ + V+KI + K T+ G+ RF A V IGD NG +G G+ S EV AI+ AI A
Sbjct: 48 NFEERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANN 107
Query: 482 SVLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVS 619
+++ V++ S H + A V+L + P GTGI++
Sbjct: 108 NLIKVKQT--KKGSIYHDVNGRHGAAKVMLLPA-----PEGTGIIA 146
>UniRef50_UPI0000DC004A Cluster: UPI0000DC004A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC004A UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 53.2 bits (122), Expect = 6e-06
Identities = 44/122 (36%), Positives = 52/122 (42%)
Frame = +2
Query: 260 PIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKE 439
P +II+FFLG L DEVL+ M Q QRTR K F + + L V CSKE
Sbjct: 46 PFSSSDIIEFFLGEHLKDEVLRTMLAQ-----NQRTRIKVFFFLTIRSPMTTL-VNCSKE 99
Query: 440 VATAIRGAIILAKLSVLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVS 619
V TA + AI L G HT + L PRGTG VS
Sbjct: 100 VGTAAQRAITLLSFLFSTQTGYKGNKIGNPHTIPCDVTATEKNLVLVCLTTAPRGTGTVS 159
Query: 620 AA 625
A+
Sbjct: 160 AS 161
Score = 35.5 bits (78), Expect = 1.2
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 487 FTSSKXLRGNXIGKPHTVPCKVTGKCGSXTVRLIXAPSWYWNCVCGQFPKKL 642
F++ +GN IG PHT+PC VT + + + V PKKL
Sbjct: 115 FSTQTGYKGNKIGNPHTIPCDVTATEKNLVLVCLTTAPRGTGTVSASVPKKL 166
>UniRef50_P59123 Cluster: 30S ribosomal protein S5; n=22;
Bacteria|Rep: 30S ribosomal protein S5 - Oceanobacillus
iheyensis
Length = 167
Score = 52.8 bits (121), Expect = 7e-06
Identities = 25/64 (39%), Positives = 39/64 (60%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 484
L + V+ + V K + G+R RF A V +GD NGH+G G ++EV AI+ A+ AK +
Sbjct: 12 LEERVVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIKKAVDDAKKN 71
Query: 485 VLPV 496
++ V
Sbjct: 72 LISV 75
>UniRef50_Q6YR05 Cluster: 30S ribosomal protein S5; n=22;
Bacteria|Rep: 30S ribosomal protein S5 - Onion yellows
phytoplasma
Length = 171
Score = 52.0 bits (119), Expect = 1e-05
Identities = 34/117 (29%), Positives = 56/117 (47%)
Frame = +2
Query: 299 PSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAK 478
P L ++V+KI + K + G R RF A V +GD G IG +KE+ AI+ A+ AK
Sbjct: 13 PLLEEKVVKINRITKVVKGGARFRFSALVVVGDKKGQIGFATAKAKEIVEAIKKALEKAK 72
Query: 479 LSVLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAASFLRSFFQ 649
++ + +T + ++ R AS + +GTGIV+ R+ +
Sbjct: 73 KQLVRI----PITGTTIPHDTIGRFGASKFFLKPA----SKGTGIVAGGKAARTILE 121
>UniRef50_Q8EUD0 Cluster: 30S ribosomal protein S5; n=3;
Mycoplasma|Rep: 30S ribosomal protein S5 - Mycoplasma
penetrans
Length = 234
Score = 52.0 bits (119), Expect = 1e-05
Identities = 31/105 (29%), Positives = 54/105 (51%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 484
L ++++ + + K T+ G+ RF A IGD G++G G+ S EV AIR A+ AK +
Sbjct: 78 LEEKIVGVKKISKTTKGGRNMRFSALAVIGDRKGNVGFGLGKSIEVPVAIRKALKSAKNN 137
Query: 485 VLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVS 619
+ V+ T + + + A VL + P+GTG+++
Sbjct: 138 MYKVKMNKNFTL---YHEVIGKHGAGKVLIKPA----PKGTGVIA 175
>UniRef50_Q7Y258 Cluster: Ribosomal protein S5 precursor; n=1;
Chlamydomonas reinhardtii|Rep: Ribosomal protein S5
precursor - Chlamydomonas reinhardtii
Length = 673
Score = 51.2 bits (117), Expect = 2e-05
Identities = 24/71 (33%), Positives = 43/71 (60%)
Frame = +2
Query: 284 DFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 463
DF G + + ++++ V K + G+ F+ IG+ NG +G+G + +EVATA++ A
Sbjct: 506 DFDDGENWQERIIELSRVTKVVKGGKLMGFRCTAIIGNGNGLVGVGCQAGREVATAVKRA 565
Query: 464 IILAKLSVLPV 496
++ AK SV+ V
Sbjct: 566 LVDAKKSVVRV 576
>UniRef50_Q5NQ48 Cluster: 30S ribosomal protein S5; n=155; cellular
organisms|Rep: 30S ribosomal protein S5 - Zymomonas
mobilis
Length = 233
Score = 51.2 bits (117), Expect = 2e-05
Identities = 38/118 (32%), Positives = 57/118 (48%)
Frame = +2
Query: 296 GPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 475
G L ++++ I V K + G+R F A V +GD G +G G ++EV AI A A
Sbjct: 56 GEELIEKLVHINRVSKTVKGGKRFGFAALVVVGDGKGRVGFGHGKAREVPEAISKATAAA 115
Query: 476 KLSVLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAASFLRSFFQ 649
K +++ V G T H R A +V +S P GTGI+ A +R+ F+
Sbjct: 116 KKTMIRVPLREGRTL---HHDGRGRFGAGLVYLRSA----PSGTGII-AGGPMRAIFE 165
>UniRef50_Q74MD4 Cluster: 30S ribosomal protein S5P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S5P -
Nanoarchaeum equitans
Length = 231
Score = 49.6 bits (113), Expect = 7e-05
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 338 QKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXYG 511
QK+T G +TR++ +GD +GH+G+G+ S ++ A AI AKL+++ V R G
Sbjct: 72 QKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCG 129
Score = 34.7 bits (76), Expect = 2.1
Identities = 14/22 (63%), Positives = 17/22 (77%)
Frame = +3
Query: 180 WVPVTKLGRLVREGKIDKLESI 245
W P TKLGRLV+EGKI ++ I
Sbjct: 7 WQPKTKLGRLVKEGKITNIDEI 28
>UniRef50_Q9X1J2 Cluster: 30S ribosomal protein S5; n=6;
Bacteria|Rep: 30S ribosomal protein S5 - Thermotoga
maritima
Length = 178
Score = 48.8 bits (111), Expect = 1e-04
Identities = 32/106 (30%), Positives = 55/106 (51%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+++++I K T+ G+ F+ +G+ NG +GLG+ ++EV AIR AI AK +++
Sbjct: 17 EKIIEIRRTSKVTKGGKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAKRNIV 76
Query: 491 PVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
V G + H + R AS VL + GTGI++ +
Sbjct: 77 EVPVING---TIPH-EVIGRQDASKVLLKPA----APGTGIIAGGT 114
>UniRef50_Q8RIH3 Cluster: 30S ribosomal protein S5; n=3;
Fusobacterium nucleatum|Rep: 30S ribosomal protein S5 -
Fusobacterium nucleatum subsp. nucleatum
Length = 164
Score = 48.8 bits (111), Expect = 1e-04
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+++LKI V K T+ G+ F A+GD G IGLG+ + V AIR AI AK +++
Sbjct: 11 EKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIV 70
Query: 491 PV 496
+
Sbjct: 71 KI 72
>UniRef50_Q6F1X7 Cluster: 30S ribosomal protein S5; n=32;
Bacteria|Rep: 30S ribosomal protein S5 - Mesoplasma
florum (Acholeplasma florum)
Length = 206
Score = 48.0 bits (109), Expect = 2e-04
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +2
Query: 290 FLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAII 469
F ++V+ I V K T+ G+ RF A V +GD G +GLG + EV AI+ A+
Sbjct: 38 FQKDDFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGDKKGQVGLGTGKANEVPEAIKKAVK 97
Query: 470 LAKLSVLPV 496
AK +++ V
Sbjct: 98 EAKKNLIRV 106
>UniRef50_P59122 Cluster: 30S ribosomal protein S5; n=40;
Bacteria|Rep: 30S ribosomal protein S5 - Bifidobacterium
longum
Length = 233
Score = 48.0 bits (109), Expect = 2e-04
Identities = 36/111 (32%), Positives = 51/111 (45%)
Frame = +2
Query: 296 GPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 475
G L D V+ I V K + G+ F A V +GD NG +G+G S+EV AI + A
Sbjct: 42 GDELLDRVVTINRVSKTHKGGRTFSFAALVVVGDGNGTVGVGYGKSREVPAAIAKGQLDA 101
Query: 476 KLSVLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
K + V R G + +H P A VL + GTG+++ S
Sbjct: 102 KKHMFSVPRVRG---TITH-PVQGHDAAGTVLLRPA----APGTGVIAGGS 144
>UniRef50_Q9RSL1 Cluster: 30S ribosomal protein S5; n=2;
Deinococcus|Rep: 30S ribosomal protein S5 - Deinococcus
radiodurans
Length = 196
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+++L + K + G+R RF A V +GD NG +G+G+ +KEV AI A +A+ +++
Sbjct: 19 EKMLFVNRTSKTYQGGRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAVARKNMI 78
Query: 491 PV 496
V
Sbjct: 79 TV 80
>UniRef50_P93014 Cluster: 30S ribosomal protein S5, chloroplast
precursor; n=12; cellular organisms|Rep: 30S ribosomal
protein S5, chloroplast precursor - Arabidopsis thaliana
(Mouse-ear cress)
Length = 303
Score = 47.2 bits (107), Expect = 4e-04
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 491 PV 496
V
Sbjct: 209 QV 210
>UniRef50_UPI0000D9EF8A Cluster: PREDICTED: similar to 40S ribosomal
protein S2; n=1; Macaca mulatta|Rep: PREDICTED: similar
to 40S ribosomal protein S2 - Macaca mulatta
Length = 181
Score = 46.4 bits (105), Expect = 7e-04
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +3
Query: 162 KEDQKXWVPVTKLGRLVREGKIDKLESIYLF 254
K + K W+PVTKLGRLV++ KI LE IYLF
Sbjct: 54 KAEDKEWMPVTKLGRLVKDMKIKSLEEIYLF 84
>UniRef50_A0T0Y9 Cluster: Chloroplast 30S ribosomal protein S5; n=3;
cellular organisms|Rep: Chloroplast 30S ribosomal
protein S5 - Thalassiosira pseudonana (Marine diatom)
Length = 179
Score = 46.0 bits (104), Expect = 9e-04
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 463
+ ++KI V K T+ G++ F+A V IGD NG +G+GV +++V A + A
Sbjct: 28 ERLIKISRVTKVTKGGKKLSFRAVVVIGDENGKVGVGVGKAEDVVNAFKKA 78
>UniRef50_A7QPU4 Cluster: Chromosome chr10 scaffold_138, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr10 scaffold_138, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 340
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/62 (30%), Positives = 38/62 (61%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+ V+++ V K + G++ F+A V +GD G +G+GV +KEV A++ + A+ +++
Sbjct: 186 ERVVQVRRVTKVVKGGKQLHFRAVVVVGDKQGQVGVGVGKAKEVIAAVQKSATNARRNII 245
Query: 491 PV 496
V
Sbjct: 246 TV 247
>UniRef50_Q92QF3 Cluster: 30S ribosomal protein S5; n=203; cellular
organisms|Rep: 30S ribosomal protein S5 - Rhizobium
meliloti (Sinorhizobium meliloti)
Length = 189
Score = 45.6 bits (103), Expect = 0.001
Identities = 38/113 (33%), Positives = 54/113 (47%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
D+++ I V K + G+R F A V +GD G +G G ++EV AIR A AK ++
Sbjct: 24 DKLVAINRVAKVVKGGRRFGFAALVVVGDQKGRVGFGHGKAREVPEAIRKATEAAKRDLI 83
Query: 491 PVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAASFLRSFFQ 649
V G T H R A VL +S GTGI+ A +R+ F+
Sbjct: 84 FVPLRGGRTL---HHDVHGRHGAGKVLLRSA----KPGTGII-AGGPMRAVFE 128
>UniRef50_Q7NEG9 Cluster: 30S ribosomal protein S5; n=34; cellular
organisms|Rep: 30S ribosomal protein S5 - Gloeobacter
violaceus
Length = 223
Score = 44.8 bits (101), Expect = 0.002
Identities = 27/106 (25%), Positives = 54/106 (50%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+ V++I V K + G++ F+A + +GD NG +G+GV + +V A++ + A+ ++
Sbjct: 68 ERVVQIRRVTKVVKGGKKLSFRAVIVVGDGNGRVGVGVGKANDVIGAVKKGVSDARKAL- 126
Query: 491 PVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
+R S H S + A+V L + GTG+++ +
Sbjct: 127 -IRVPLNKINSIPHPMSGSSGAANVFLKPAS-----GGTGVIAGGA 166
>UniRef50_P66575 Cluster: 30S ribosomal protein S5; n=128;
Bacteria|Rep: 30S ribosomal protein S5 - Mycobacterium
bovis
Length = 220
Score = 44.4 bits (100), Expect = 0.003
Identities = 33/106 (31%), Positives = 51/106 (48%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+ V+ I V K + G+R F A V +GD NG +G+G +KEV AI + A+ S
Sbjct: 44 ERVVAINRVSKVVKGGRRFSFTALVIVGDGNGMVGVGYGKAKEVPAAIAKGVEEARKSFF 103
Query: 491 PVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
V G + +H P + A VVL + GTG+++ +
Sbjct: 104 RVPLIGG---TITH-PVQGEAAAGVVLLRPA----SPGTGVIAGGA 141
>UniRef50_Q9XD19 Cluster: 30S ribosomal protein S5; n=17;
Bacteria|Rep: 30S ribosomal protein S5 - Leptospira
interrogans
Length = 187
Score = 44.0 bits (99), Expect = 0.003
Identities = 35/107 (32%), Positives = 52/107 (48%)
Frame = +2
Query: 308 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 487
+++V+KI V K + G+R F A +GD G +G+G + EV AIR +I AK +
Sbjct: 31 SEKVVKIDRVAKVVKGGRRFSFNALSVVGDQRGKVGIGFGKANEVPDAIRKSIESAKKHL 90
Query: 488 LPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
+ + G T H A V+L S GTGI++ AS
Sbjct: 91 VKI-NFKGHT--IPHEVIGKFKSARVILKPS-----TAGTGIIAGAS 129
>UniRef50_O67563 Cluster: 30S ribosomal protein S5; n=5;
Bacteria|Rep: 30S ribosomal protein S5 - Aquifex
aeolicus
Length = 208
Score = 43.2 bits (97), Expect = 0.006
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 484
L + ++ + T+ G+R F V +GD GH+G G +KEV AI I AK +
Sbjct: 28 LEERLIYANRTARVTKGGRRFSFSTLVVVGDRKGHVGFGHGKAKEVTLAIAKGIEKAKKN 87
Query: 485 VLPV 496
V+ V
Sbjct: 88 VIRV 91
>UniRef50_P73304 Cluster: 30S ribosomal protein S5; n=30; cellular
organisms|Rep: 30S ribosomal protein S5 - Synechocystis
sp. (strain PCC 6803)
Length = 173
Score = 41.5 bits (93), Expect = 0.019
Identities = 26/106 (24%), Positives = 52/106 (49%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
+ V++I V K + G++ F+A V +G+ G +G+GV + +V A+R + K ++
Sbjct: 19 ERVIQIRRVSKVVKGGKKLSFRAIVVVGNETGQVGVGVGKAGDVIGAVRKGVADGKKQLI 78
Query: 491 PVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
V + S +H + A VV+ + GTG+++ +
Sbjct: 79 EV--PLTKSNSITHITNGVSGGAKVVVRPAA-----PGTGVIAGGA 117
>UniRef50_Q6AP53 Cluster: 30S ribosomal protein S5; n=8;
Bacteria|Rep: 30S ribosomal protein S5 - Desulfotalea
psychrophila
Length = 171
Score = 41.1 bits (92), Expect = 0.024
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAK 478
L ++++ I V K + G+R F A V +GD NG +G G+ + +V AIR + A+
Sbjct: 16 LIEKIVFINRVAKVVKGGRRFSFSAIVVVGDGNGKVGYGLGKANQVPEAIRKGVERAR 73
>UniRef50_UPI0000502977 Cluster: UPI0000502977 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000502977 UniRef100 entry -
Rattus norvegicus
Length = 140
Score = 40.7 bits (91), Expect = 0.032
Identities = 19/28 (67%), Positives = 19/28 (67%)
Frame = +1
Query: 511 GNXIGKPHTVPCKVTGKCGSXTVRLIXA 594
GN IGK H V CKVTG CGS V LI A
Sbjct: 7 GNKIGKTHIVLCKVTGCCGSVLVHLIPA 34
>UniRef50_Q82X75 Cluster: 30S ribosomal protein S5; n=11;
Bacteria|Rep: 30S ribosomal protein S5 - Nitrosomonas
europaea
Length = 177
Score = 40.3 bits (90), Expect = 0.043
Identities = 31/115 (26%), Positives = 54/115 (46%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 484
L ++++ + V K + G+ F A +GD G +G+G S+EV A++ A+ A+
Sbjct: 21 LKEKMVSVNRVTKVVKGGRILGFAALTVVGDGKGSVGMGKGKSREVPLAVQKAMDEARQR 80
Query: 485 VLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAASFLRSFFQ 649
++ V G H + R A+ V Q GTGI+ A +R+ F+
Sbjct: 81 MVRVNLINGTL----HHSVIGRHGAARVYMQPA----SEGTGII-AGGPMRAIFE 126
>UniRef50_Q5L704 Cluster: 30S ribosomal protein S5; n=7;
Chlamydiaceae|Rep: 30S ribosomal protein S5 -
Chlamydophila abortus
Length = 165
Score = 39.1 bits (87), Expect = 0.099
Identities = 27/107 (25%), Positives = 50/107 (46%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 484
L ++VL + K + G++ F A + +GD G +G G + E+ AIR A+ +
Sbjct: 13 LEEKVLVVNRCSKVVKGGRKFSFSALILVGDGKGRLGYGFAKANELTDAIRKGGEAARKN 72
Query: 485 VLPVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAA 625
++ + G S H + + A ++L + GTGIV+ +
Sbjct: 73 LITIESLEG--DSIPHEVLVDQDGAQLLLKPA-----KPGTGIVAGS 112
>UniRef50_O15578 Cluster: Ribosomal protein S2; n=1; Entamoeba
histolytica|Rep: Ribosomal protein S2 - Entamoeba
histolytica
Length = 88
Score = 38.7 bits (86), Expect = 0.13
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +3
Query: 180 WVPVTKLGRLVREGKIDKLESIYLF 254
W PVTKLGRLV++GK+ ++ I+ F
Sbjct: 35 WTPVTKLGRLVKDGKVKSIDQIFEF 59
>UniRef50_Q5FFR5 Cluster: 30S ribosomal protein S5; n=5; canis
group|Rep: 30S ribosomal protein S5 - Ehrlichia
ruminantium (strain Gardel)
Length = 174
Score = 38.3 bits (85), Expect = 0.17
Identities = 31/111 (27%), Positives = 52/111 (46%)
Frame = +2
Query: 317 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPV 496
++ + V K + G+R F V IGD G +G G+ EV+ A A+ A+ +++ V
Sbjct: 20 IVSVRRVAKVVKGGRRFSFSVLVVIGDEKGKVGCGIGKHLEVSEAKVKAVNAARKNMIRV 79
Query: 497 RRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAASFLRSFFQ 649
T H A+ +S V+ +S GTGI++ S +R F+
Sbjct: 80 HLRESRTL---HHDIQAKFCSSKVMLRSA----KVGTGIIAGGS-IRLIFE 122
>UniRef50_UPI000023F324 Cluster: hypothetical protein FG00649.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG00649.1 - Gibberella zeae PH-1
Length = 504
Score = 37.9 bits (84), Expect = 0.23
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 335 VQKQTRAGQRTRFKAFVAI-GDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRXYG 511
V QTR G + R + VAI G+ NG +GLG+ S E A A +LA ++ PVRR
Sbjct: 350 VSNQTRLG-KVRSTSVVAIAGNGNGRLGLGMAKSTEPGVAEETAQMLAIRNMKPVRRYEN 408
Query: 512 VTXSXSHTPSLARSPASVVLXQSG 583
T + T ++ + ++ G
Sbjct: 409 RTIYGNVTSKISGTVVELMARPPG 432
>UniRef50_A7CZB7 Cluster: Ribosomal protein S5; n=1; Opitutaceae
bacterium TAV2|Rep: Ribosomal protein S5 - Opitutaceae
bacterium TAV2
Length = 231
Score = 37.5 bits (83), Expect = 0.30
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIR 457
L ++V+ I K + G+R F A +GD NG +G+G + EV AI+
Sbjct: 71 LVEKVVFINRCAKVVKGGRRFSFSALAVVGDKNGKVGIGYGKANEVPDAIK 121
>UniRef50_A4R1A2 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 414
Score = 37.5 bits (83), Expect = 0.30
Identities = 21/66 (31%), Positives = 35/66 (53%)
Frame = +2
Query: 305 LNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 484
L ++L V QTR G+ + +G+ NG IGLG S + A+ A ++A +
Sbjct: 250 LRHKILVQRFVTNQTRLGKVQSWHIMTIVGNGNGRIGLGEAKSVDGQIAMHKARLMAIKN 309
Query: 485 VLPVRR 502
++P+RR
Sbjct: 310 MVPIRR 315
>UniRef50_Q6KI38 Cluster: 30S ribosomal protein S5; n=9;
Firmicutes|Rep: 30S ribosomal protein S5 - Mycoplasma
mobile
Length = 243
Score = 37.5 bits (83), Expect = 0.30
Identities = 29/106 (27%), Positives = 52/106 (49%)
Frame = +2
Query: 311 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 490
++++ I V + G+R F A V +GD G +G G + EV AI+ A+ A+ +++
Sbjct: 91 EKIVNIARVTNVVKGGRRFSFAAVVVVGDKKGRVGYGHGKALEVPDAIKKAVKDAQNNLI 150
Query: 491 PVRRXYGVTXSXSHTPSLARSPASVVLXQSG*XLLPRGTGIVSAAS 628
R + S A+ AS V+ + P+G GI+++ S
Sbjct: 151 ---RVPIINKSTVPHEQWAKFLASKVMLKPA----PKGKGIIASNS 189
>UniRef50_Q4EF76 Cluster: Putative uncharacterized protein; n=1;
Listeria monocytogenes str. 4b H7858|Rep: Putative
uncharacterized protein - Listeria monocytogenes str. 4b
H7858
Length = 77
Score = 37.1 bits (82), Expect = 0.40
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = -3
Query: 466 NSASNGSGDFLAALHTQTNMTVVVANGNKCLET 368
NS ++ +FL T+TNMT+ V+N NKC ET
Sbjct: 25 NSFTDSIWNFLRFTSTETNMTIFVSNNNKCCET 57
>UniRef50_A6PPX8 Cluster: Ribosomal protein S5; n=4; Bacteria|Rep:
Ribosomal protein S5 - Victivallis vadensis ATCC BAA-548
Length = 181
Score = 35.9 bits (79), Expect = 0.92
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +2
Query: 308 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIR 457
++ V+ I K + G+ F A V +GD G +G G + EV+ AIR
Sbjct: 16 DESVISINRSAKVVKGGKNFSFGALVVVGDRKGRVGYGYGKANEVSDAIR 65
>UniRef50_Q8X048 Cluster: Related to ribosomal protein S5; n=1;
Neurospora crassa|Rep: Related to ribosomal protein S5 -
Neurospora crassa
Length = 477
Score = 35.5 bits (78), Expect = 1.2
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = +2
Query: 335 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRR 502
V QTR G+ V G+ +G +GLG+ S E + A+ A +LA ++ P+ R
Sbjct: 323 VVNQTRLGKIASDSVMVIAGNGDGWLGLGMAKSVEASIAVEKATLLAIQNMQPIPR 378
>UniRef50_Q2GVX5 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 407
Score = 35.5 bits (78), Expect = 1.2
Identities = 24/82 (29%), Positives = 40/82 (48%)
Frame = +2
Query: 302 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 481
+L+ + L V QTR G+ + +G+ NG +G+G S E + A A +LA
Sbjct: 242 NLHSKQLVQRRVANQTRLGKVQKASIMYVVGNGNGWLGIGEAKSTEPSIAGLKARLLAIR 301
Query: 482 SVLPVRRXYGVTXSXSHTPSLA 547
++ P+RR T S T ++
Sbjct: 302 NMRPIRRYEDRTIYGSVTAKVS 323
>UniRef50_Q25815 Cluster: Rps5 protein; n=1; Plasmodium
falciparum|Rep: Rps5 protein - Plasmodium falciparum
Length = 239
Score = 34.7 bits (76), Expect = 2.1
Identities = 21/66 (31%), Positives = 37/66 (56%)
Frame = +2
Query: 293 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 472
L ++ +++++I + + G+ R+K + +G+ G IGLGV SK + I AII
Sbjct: 94 LNNNIIEKIIEIKKISYTIKKGRIRRYKIVLVLGNKQGWIGLGV--SKNI--NINKAIIS 149
Query: 473 AKLSVL 490
AK+ L
Sbjct: 150 AKIKAL 155
>UniRef50_P33759 Cluster: 37S ribosomal protein S5, mitochondrial
precursor; n=6; Saccharomycetales|Rep: 37S ribosomal
protein S5, mitochondrial precursor - Saccharomyces
cerevisiae (Baker's yeast)
Length = 307
Score = 34.7 bits (76), Expect = 2.1
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 290 FLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGV-KCSKEVATAI 454
++ L + L + V QT G+ F A V +GD NG +GLG K +E++ AI
Sbjct: 139 YITRKLTMKPLVMKRVSNQTGKGKIASFYALVVVGDKNGMVGLGEGKSREEMSKAI 194
>UniRef50_A2RAI1 Cluster: Remark: literature about the mitochondrial
ribosome structure: Pubmed 11279123. precursor; n=9;
Eurotiomycetidae|Rep: Remark: literature about the
mitochondrial ribosome structure: Pubmed 11279123.
precursor - Aspergillus niger
Length = 444
Score = 34.3 bits (75), Expect = 2.8
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +2
Query: 302 SLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 481
SL + L I V QTR G+ G+ NG +G+G+ S E+ A + A A
Sbjct: 254 SLYIKDLVIRRVSNQTRLGKVPSMSVVTVAGNQNGLMGIGIAKSDEIIDACQQARARAVK 313
Query: 482 SVLPVRR 502
++ PV R
Sbjct: 314 NMQPVPR 320
>UniRef50_UPI000056598D Cluster: UPI000056598D related cluster; n=1;
Mus musculus|Rep: UPI000056598D UniRef100 entry - Mus
musculus
Length = 239
Score = 33.9 bits (74), Expect = 3.7
Identities = 26/79 (32%), Positives = 35/79 (44%)
Frame = +2
Query: 221 KNRQTREHLLVSLPIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 400
K + E L P K I F G SL D+++ + + + QRT+
Sbjct: 48 KIKSQEEVCLFCCPSKSLFTITDFPGESLKDDLMMASGLGSRLLSSQRTK---------- 97
Query: 401 NGHIGLGVKCSKEVATAIR 457
GH GL CS EVATAI+
Sbjct: 98 -GHSGLSSMCSGEVATAIQ 115
>UniRef50_A7RP03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 270
Score = 33.1 bits (72), Expect = 6.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 317 VLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGA 463
V+++ V T G++ +A V +G+ NG G GV + +AIR A
Sbjct: 156 VVELRRVSNVTSGGKKRSLRALVVVGNRNGAAGFGVGKGRTPISAIRKA 204
>UniRef50_A0VB43 Cluster: Phage SPO1 DNA polymerase-related protein;
n=2; Comamonadaceae|Rep: Phage SPO1 DNA
polymerase-related protein - Delftia acidovorans SPH-1
Length = 369
Score = 32.7 bits (71), Expect = 8.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 639 LLRKLAADTIPVPRGSXNQPDCXRTTLAGDLAR 541
+L + A+++P+P PDC RT L GD AR
Sbjct: 206 ILLEPPANSLPLPPAQRPGPDCARTALEGDAAR 238
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,553,790
Number of Sequences: 1657284
Number of extensions: 12111982
Number of successful extensions: 30458
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 29386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30419
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53305790091
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -